NM_021098.3(CACNA1H):c.6545G>A (p.Arg2182His) AND multiple conditions

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 21, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001240292.7

Allele description [Variation Report for NM_021098.3(CACNA1H):c.6545G>A (p.Arg2182His)]

NM_021098.3(CACNA1H):c.6545G>A (p.Arg2182His)

Gene:

CACNA1H:calcium voltage-gated channel subunit alpha1 H [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_021098.3(CACNA1H):c.6545G>A (p.Arg2182His)

HGVS:

NC_000016.10:g.1220477G>A
NG_012647.1:g.72237G>A
NM_001005407.2:c.6527G>A
NM_021098.3:c.6545G>AMANE SELECT
NP_001005407.1:p.Arg2176His
NP_066921.2:p.Arg2182His
NC_000016.9:g.1270477G>A
NM_021098.2:c.6545G>A

Protein change:

R2176H

Links:

dbSNP: rs200724225

NCBI 1000 Genomes Browser:

rs200724225

Molecular consequence:

NM_001005407.2:c.6527G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_021098.3:c.6545G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Idiopathic generalized epilepsy
Synonyms:: EIG; Generalised epilepsy
Identifiers:: MONDO: MONDO:0005579; MedGen: C0270850; OMIM: 600669; OMIM: PS600669

Name:: Hyperaldosteronism, familial, type IV (HALD4)
Synonyms:: FH IV; ALDOSTERONISM, PRIMARY, AND HYPERTENSION
Identifiers:: MONDO: MONDO:0014875; MedGen: C4310756; OMIM: 617027

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001413223	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Dec 21, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001413223

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Dec 21, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV001413223.5

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jul 15, 2024

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