NM_006269.2(RP1):c.4908C>A (p.Tyr1636Ter) AND Retinitis pigmentosa 1

Clinical significance:Likely pathogenic (Last evaluated: Oct 27, 2019)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV001199314.1

Allele description [Variation Report for NM_006269.2(RP1):c.4908C>A (p.Tyr1636Ter)]

NM_006269.2(RP1):c.4908C>A (p.Tyr1636Ter)

Gene:
RP1:RP1 axonemal microtubule associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q12.1
Genomic location:
Preferred name:
NM_006269.2(RP1):c.4908C>A (p.Tyr1636Ter)
HGVS:
  • NC_000008.11:g.54628790C>A
  • NG_009840.1:g.17724C>A
  • NG_009840.2:g.17724C>A
  • NM_001375654.1:c.787+6502C>A
  • NM_006269.2:c.4908C>AMANE SELECT
  • NP_006260.1:p.Tyr1636Ter
  • NC_000008.10:g.55541350C>A
  • NM_006269.1:c.4908C>A
Protein change:
Y1636*
Molecular consequence:
  • NM_001375654.1:c.787+6502C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006269.2:c.4908C>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Retinitis pigmentosa 1 (RP1)
Identifiers:
MONDO: MONDO:0008377; MedGen: C0220701; Orphanet: 791; OMIM: 180100

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001370394Centre for Mendelian Genomics,University Medical Centre Ljubljanacriteria provided, single submitter
Likely pathogenic
(Oct 27, 2019)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics,University Medical Centre Ljubljana, SCV001370394.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was classified as: Likely pathogenic. The following ACMG criteria were applied in classifying this variant: PVS1,PM2.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 7, 2021

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