NM_001123385.2(BCOR):c.4202C>T (p.Pro1401Leu) AND Oculofaciocardiodental syndrome

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Mar 27, 2019
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001197726.5

Allele description [Variation Report for NM_001123385.2(BCOR):c.4202C>T (p.Pro1401Leu)]

NM_001123385.2(BCOR):c.4202C>T (p.Pro1401Leu)

Gene:

BCOR:BCL6 corepressor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xp11.4

Genomic location:

Preferred name:

NM_001123385.2(BCOR):c.4202C>T (p.Pro1401Leu)

HGVS:

NC_000023.11:g.40062365G>A
NG_008880.1:g.119965C>T
NM_001123383.1:c.4100C>T
NM_001123384.2:c.4046C>T
NM_001123385.2:c.4202C>TMANE SELECT
NM_017745.6:c.4100C>T
NP_001116855.1:p.Pro1367Leu
NP_001116856.1:p.Pro1349Leu
NP_001116857.1:p.Pro1401Leu
NP_060215.4:p.Pro1367Leu
LRG_627t1:c.4100C>T
LRG_627t2:c.4202C>T
LRG_627:g.119965C>T
LRG_627p1:p.Pro1367Leu
NC_000023.10:g.39921618G>A
NM_001123385.1:c.4202C>T
NM_017745.5:c.4100C>T

Protein change:

P1349L

Links:

dbSNP: rs201959477

NCBI 1000 Genomes Browser:

rs201959477

Molecular consequence:

NM_001123383.1:c.4100C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001123384.2:c.4046C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001123385.2:c.4202C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_017745.6:c.4100C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Oculofaciocardiodental syndrome (MCOPS2)
Synonyms:: Microphthalmia cataracts radiculomegaly and septal heart defects
Identifiers:: MONDO: MONDO:0010261; MedGen: C1846265; OMIM: 300166

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001368505	Centre for Mendelian Genomics, University Medical Centre Ljubljana	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Nov 7, 2018)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV003829826	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Mar 27, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001368505

Centre for Mendelian Genomics, University Medical Centre Ljubljana

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Nov 7, 2018)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV003829826

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Mar 27, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV001368505.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was classified as: Uncertain significance. The available evidence on this variant's pathogenicity is insufficient or conflicting. The following ACMG criteria were applied in classifying this variant: PP3,BP1.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Revvity Omics, Revvity, SCV003829826.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 16, 2024

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