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NM_000041.4(APOE):c.388T>C (p.Cys130Arg) AND Alzheimer disease 4

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 24, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001195807.1

Allele description

NM_000041.4(APOE):c.388T>C (p.Cys130Arg)

Gene:
APOE:apolipoprotein E [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_000041.4(APOE):c.388T>C (p.Cys130Arg)
Other names:
C112R; ApoE4
HGVS:
  • NC_000019.10:g.44908684T>C
  • NG_007084.2:g.7903T>C
  • NM_000041.4:c.388T>CMANE SELECT
  • NM_001302688.2:c.466T>C
  • NM_001302689.2:c.388T>C
  • NM_001302690.2:c.388T>C
  • NM_001302691.2:c.388T>C
  • NP_000032.1:p.Cys130Arg
  • NP_001289617.1:p.Cys156Arg
  • NP_001289618.1:p.Cys130Arg
  • NP_001289619.1:p.Cys130Arg
  • NP_001289620.1:p.Cys130Arg
  • NC_000019.9:g.45411941T>C
  • NM_000041.2:c.388T>C
  • NM_000041.3:c.388T>C
  • P02649:p.Cys130Arg
Protein change:
C130R; CYS112ARG
Links:
UniProtKB: P02649#VAR_000652; OMIM: 107741.0008; OMIM: 107741.0016; OMIM: 107741.0022; OMIM: 107741.0023; OMIM: 107741.0025; dbSNP: rs429358
NCBI 1000 Genomes Browser:
rs429358
Molecular consequence:
  • NM_000041.4:c.388T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302688.2:c.466T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302689.2:c.388T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302690.2:c.388T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302691.2:c.388T>C - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
Uncertain function

Condition(s)

Name:
Alzheimer disease 4
Synonyms:
Alzheimer disease familial type 4
Identifiers:
MONDO: MONDO:0011743; MedGen: C1847200; Orphanet: 1020; OMIM: 606889

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001366227Centre for Mendelian Genomics,University Medical Centre Ljubljana
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Mar 24, 2020) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics,University Medical Centre Ljubljana, SCV001366227.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was classified as: Pathogenic. The following ACMG criteria were applied in classifying this variant: PM4. This variant was detected in homozygous state.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 18, 2022