NM_015404.4(WHRN):c.2644C>A (p.Arg882Ser) AND Deafness, autosomal recessive 31

Clinical significance:Uncertain significance (Last evaluated: Apr 27, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV001165659.1

Allele description [Variation Report for NM_015404.4(WHRN):c.2644C>A (p.Arg882Ser)]

NM_015404.4(WHRN):c.2644C>A (p.Arg882Ser)

Gene:
WHRN:whirlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q32
Genomic location:
Preferred name:
NM_015404.4(WHRN):c.2644C>A (p.Arg882Ser)
HGVS:
  • NC_000009.12:g.114402834G>T
  • NG_016700.1:g.107623C>A
  • NM_001083885.2:c.1495C>A
  • NM_001173425.2:c.2641C>A
  • NM_001346890.1:c.1591C>A
  • NM_015404.4:c.2644C>AMANE SELECT
  • NP_001077354.2:p.Arg499Ser
  • NP_001166896.1:p.Arg881Ser
  • NP_001333819.1:p.Arg531Ser
  • NP_056219.3:p.Arg882Ser
  • LRG_1094t1:c.2644C>A
  • LRG_1094:g.107623C>A
  • LRG_1094p1:p.Arg882Ser
  • NC_000009.11:g.117165114G>T
  • NM_015404.2:c.2644C>A
  • NM_015404.3:c.2644C>A
Protein change:
R499S
Links:
dbSNP: rs150586098
NCBI 1000 Genomes Browser:
rs150586098
Molecular consequence:
  • NM_001083885.2:c.1495C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001173425.2:c.2641C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346890.1:c.1591C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015404.4:c.2644C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Deafness, autosomal recessive 31 (DFNB31)
Synonyms:
WHIRLER, MOUSE, HOMOLOG OF
Identifiers:
MONDO: MONDO:0011767; MedGen: C1846839; Orphanet: 90636; OMIM: 607084

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001327876Illumina Clinical Services Laboratory,Illuminacriteria provided, single submitter
Uncertain significance
(Apr 27, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Clinical Services Laboratory,Illumina, SCV001327876.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases did not allow this variant to be ruled in or out of causing disease. Therefore, this variant is classified as a variant of unknown significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 17, 2021

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