NM_012233.3(RAB3GAP1):c.913A>G (p.Ile305Val) AND Warburg micro syndrome 1

Germline classification:: Benign (1 submission)
Last evaluated:: Apr 27, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001132408.5

Allele description [Variation Report for NM_012233.3(RAB3GAP1):c.913A>G (p.Ile305Val)]

NM_012233.3(RAB3GAP1):c.913A>G (p.Ile305Val)

Gene:

RAB3GAP1:RAB3 GTPase activating protein catalytic subunit 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q21.3

Genomic location:

Preferred name:

NM_012233.3(RAB3GAP1):c.913A>G (p.Ile305Val)

HGVS:

NC_000002.12:g.135126596A>G
NG_016972.1:g.79332A>G
NM_001172435.2:c.913A>G
NM_012233.3:c.913A>GMANE SELECT
NP_001165906.1:p.Ile305Val
NP_036365.1:p.Ile305Val
NC_000002.11:g.135884166A>G
NM_001172435.1:c.913A>G
NM_012233.2:c.913A>G

Protein change:

I305V

Links:

dbSNP: rs116775947

NCBI 1000 Genomes Browser:

rs116775947

Molecular consequence:

NM_001172435.2:c.913A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_012233.3:c.913A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Warburg micro syndrome 1 (WARBM1)
Synonyms:: Microcephaly, microcornea, congenital cataract, mental retardation, optic atrophy and hypogenitalism
Identifiers:: MONDO: MONDO:0010822; MedGen: C1838625; Orphanet: 2510; OMIM: 600118

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001292067	Illumina Laboratory Services, Illumina	criteria provided, single submitter (ICSL Variant Classification Criteria 13 December 2019)	Benign (Apr 27, 2017)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001292067

Illumina Laboratory Services, Illumina

criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)

Benign
(Apr 27, 2017)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV001292067.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases was too high to be consistent with this variant causing disease. Therefore, this variant is classified as benign.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

ClinVar

Relating variation to medicine