NM_181798.1(KCNQ1):c.1563C>T (p.Val521=) AND Short QT syndrome 2

Clinical significance:Benign (Last evaluated: Apr 27, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV001105132.1

Allele description [Variation Report for NM_181798.1(KCNQ1):c.1563C>T (p.Val521=)]

NM_181798.1(KCNQ1):c.1563C>T (p.Val521=)

Genes:
KCNQ1-AS1:KCNQ1 antisense RNA 1 [Gene - HGNC]
KCNQ1:potassium voltage-gated channel subfamily Q member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_181798.1(KCNQ1):c.1563C>T (p.Val521=)
Other names:
p.V648V:GTC>GTT
HGVS:
  • NC_000011.10:g.2847916C>T
  • NG_008935.1:g.407926C>T
  • NM_000218.2:c.1944C>T
  • NM_181798.1:c.1563C>T
  • NP_000209.2:p.Val648=
  • NP_861463.1:p.Val521=
  • LRG_287t1:c.1944C>T
  • LRG_287t2:c.1563C>T
  • LRG_287:g.407926C>T
  • LRG_287p1:p.Val648=
  • LRG_287p2:p.Val521=
  • NC_000011.9:g.2869146C>T
Links:
dbSNP: rs201698592
NCBI 1000 Genomes Browser:
rs201698592
Molecular consequence:
  • NM_000218.2:c.1944C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_181798.1:c.1563C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Short QT syndrome 2 (SQT2)
Identifiers:
MONDO: MONDO:0012313; MedGen: C1865019; Orphanet: 51083; OMIM: 609621

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001262054Illumina Clinical Services Laboratory,Illuminacriteria provided, single submitter
Benign
(Apr 27, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Clinical Services Laboratory,Illumina, SCV001262054.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases was too high to be consistent with this variant causing disease. Therefore, this variant is classified as benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 14, 2021

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