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NM_001243279.3(ACSF3):c.1081G>A (p.Gly361Ser) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:
Feb 1, 2022
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001093042.25

Allele description [Variation Report for NM_001243279.3(ACSF3):c.1081G>A (p.Gly361Ser)]

NM_001243279.3(ACSF3):c.1081G>A (p.Gly361Ser)

Genes:
LOC125177393:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:89180375-89181574 [Gene]
ACSF3:acyl-CoA synthetase family member 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q24.3
Genomic location:
Preferred name:
NM_001243279.3(ACSF3):c.1081G>A (p.Gly361Ser)
HGVS:
  • NC_000016.10:g.89114442G>A
  • NG_031961.1:g.25634G>A
  • NM_001127214.4:c.1081G>A
  • NM_001243279.3:c.1081G>AMANE SELECT
  • NM_001284316.2:c.286G>A
  • NM_174917.5:c.1081G>A
  • NP_001120686.1:p.Gly361Ser
  • NP_001230208.1:p.Gly361Ser
  • NP_001271245.1:p.Gly96Ser
  • NP_777577.2:p.Gly361Ser
  • NC_000016.9:g.89180850G>A
  • NM_001127214.4:c.1081G>A
  • NM_174917.3:c.1081G>A
  • NM_174917.4:c.1081G>A
  • NR_104293.2:n.1419G>A
  • NR_147928.2:n.1419G>A
Protein change:
G361S
Links:
dbSNP: rs145285434
NCBI 1000 Genomes Browser:
rs145285434
Molecular consequence:
  • NM_001127214.4:c.1081G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001243279.3:c.1081G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001284316.2:c.286G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_174917.5:c.1081G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104293.2:n.1419G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_147928.2:n.1419G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001249836CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely pathogenic
(Feb 1, 2022)
germlineclinical testing

Citation Link,

SCV001755833GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Dec 2, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV001249836.25

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

From GeneDx, SCV001755833.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Identified in a patient with combined malonic and methylmalonic aciduria in the presence of a second ACSF3 variant in published literature (Levtova et al., 2019); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; This variant is associated with the following publications: (PMID: 30740739)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024