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NM_001347721.2(DYRK1A):c.2008G>C (p.Ala670Pro) AND DYRK1A-related intellectual disability syndrome

Germline classification:
Benign (1 submission)
Last evaluated:
Nov 22, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001080736.2

Allele description

NM_001347721.2(DYRK1A):c.2008G>C (p.Ala670Pro)

Gene:
DYRK1A:dual specificity tyrosine phosphorylation regulated kinase 1A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.13
Genomic location:
Preferred name:
NM_001347721.2(DYRK1A):c.2008G>C (p.Ala670Pro)
HGVS:
  • NC_000021.9:g.37512274G>C
  • NG_009366.1:g.149719G>C
  • NM_001347721.2:c.2008G>CMANE SELECT
  • NM_001347722.2:c.2008G>C
  • NM_001347723.2:c.1921G>C
  • NM_001396.5:c.2035G>C
  • NM_101395.2:c.*411G>C
  • NM_130436.2:c.2008G>C
  • NM_130438.2:c.*320G>C
  • NP_001334650.1:p.Ala670Pro
  • NP_001334651.1:p.Ala670Pro
  • NP_001334652.1:p.Ala641Pro
  • NP_001387.2:p.Ala679Pro
  • NP_569120.1:p.Ala670Pro
  • NC_000021.8:g.38884577G>C
  • NM_001396.3:c.2035G>C
  • Q13627:p.Ala679Pro
Protein change:
A641P
Links:
UniProtKB: Q13627#VAR_040453; dbSNP: rs55720916
NCBI 1000 Genomes Browser:
rs55720916
Molecular consequence:
  • NM_101395.2:c.*411G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_130438.2:c.*320G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001347721.2:c.2008G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001347722.2:c.2008G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001347723.2:c.1921G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001396.5:c.2035G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130436.2:c.2008G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
DYRK1A-related intellectual disability syndrome (MRD7)
Synonyms:
INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL DOMINANT 7
Identifiers:
MONDO: MONDO:0013578; MedGen: C3279839; OMIM: 614104

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000651259Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Nov 22, 2020) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV000651259.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022