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NM_001142800.2(EYS):c.9405T>A (p.Tyr3135Ter) AND Retinal dystrophy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 10, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001075385.10

Allele description [Variation Report for NM_001142800.2(EYS):c.9405T>A (p.Tyr3135Ter)]

NM_001142800.2(EYS):c.9405T>A (p.Tyr3135Ter)

Genes:
PHF3:PHD finger protein 3 [Gene - OMIM - HGNC]
EYS:eyes shut homolog [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q12
Genomic location:
Preferred name:
NM_001142800.2(EYS):c.9405T>A (p.Tyr3135Ter)
HGVS:
  • NC_000006.12:g.63720626A>T
  • NG_023443.2:g.1991600T>A
  • NG_034034.2:g.89826A>T
  • NM_001142800.2:c.9405T>AMANE SELECT
  • NM_001290259.2:c.*6918A>T
  • NM_001292009.2:c.9468T>A
  • NM_001370348.2:c.*6918A>TMANE SELECT
  • NM_001370349.2:c.*6918A>T
  • NM_001370350.2:c.*6918A>T
  • NM_015153.4:c.*6918A>T
  • NP_001136272.1:p.Tyr3135Ter
  • NP_001278938.1:p.Tyr3156Ter
  • NC_000006.11:g.64430522A>T
  • NM_001142800.1:c.9405T>A
Protein change:
Y3135*; TYR3156TER
Links:
OMIM: 612424.0005; dbSNP: rs137853190
NCBI 1000 Genomes Browser:
rs137853190
Molecular consequence:
  • NM_001290259.2:c.*6918A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001370348.2:c.*6918A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001370349.2:c.*6918A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001370350.2:c.*6918A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_015153.4:c.*6918A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001142800.2:c.9405T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001292009.2:c.9468T>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Retinal dystrophy
Synonyms:
Inherited retinal dystrophy
Identifiers:
MONDO: MONDO:0019118; MeSH: D058499; MedGen: C0854723; Human Phenotype Ontology: HP:0000556

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001241007Blueprint Genetics
criteria provided, single submitter

(Blueprint Genetics Variant Classification Scheme)
Pathogenic
(Jul 10, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Blueprint Genetics, SCV001241007.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024