NM_138615.3(DHX30):c.1685A>G (p.His562Arg) AND multiple conditions

Clinical significance:Likely pathogenic

Review status:(0/4) 0 stars out of maximum of 4 stars

no assertion criteria provided

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV001003584.1

Allele description [Variation Report for NM_138615.3(DHX30):c.1685A>G (p.His562Arg)]

NM_138615.3(DHX30):c.1685A>G (p.His562Arg)

Gene:
DHX30:DExH-box helicase 30 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p21.31
Genomic location:
Preferred name:
NM_138615.3(DHX30):c.1685A>G (p.His562Arg)
HGVS:
  • NC_000003.12:g.47846757A>G
  • NM_001330990.1:c.1601A>G
  • NM_014966.3:c.1568A>G
  • NM_138615.3:c.1685A>GMANE SELECT
  • NP_001317919.1:p.His534Arg
  • NP_055781.2:p.His523Arg
  • NP_619520.1:p.His562Arg
  • NC_000003.11:g.47888247A>G
  • NM_138615.2:c.1685A>G
Protein change:
H523R; HIS562ARG
Links:
OMIM: 616423.0002; dbSNP: rs1060499733
NCBI 1000 Genomes Browser:
rs1060499733
Molecular consequence:
  • NM_001330990.1:c.1601A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014966.3:c.1568A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_138615.3:c.1685A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Autistic disorder of childhood onset (AUTS)
Identifiers:
MONDO: MONDO:0005260; MedGen: C0004352; OMIM: 209850; Human Phenotype Ontology: HP:0000717
Name:
Intellectual disability
Synonyms:
Dull intelligence; Low intelligence; Mental deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0001071; MedGen: C3714756; Human Phenotype Ontology: HP:0001249
Name:
Abnormality of the cerebral white matter
Synonyms:
Abnormality of subcortical white matter; Cerebral white matter abnormalities; White matter abnormalities; See all synonyms [MedGen]
Identifiers:
MedGen: C0948163; Human Phenotype Ontology: HP:0002500

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001161961NIHR Bioresource Rare Diseases, University of Cambridgeno assertion criteria providedLikely pathogenicunknownresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot provided1not providedresearch

Citations

PubMed

Whole-genome sequencing of patients with rare diseases in a national health system.

Turro E, Astle WJ, Megy K, Gräf S, Greene D, Shamardina O, Allen HL, Sanchis-Juan A, Frontini M, Thys C, Stephens J, Mapeta R, Burren OS, Downes K, Haimel M, Tuna S, Deevi SVV, Aitman TJ, Bennett DL, Calleja P, Carss K, Caulfield MJ, et al.

Nature. 2020 Jul;583(7814):96-102. doi: 10.1038/s41586-020-2434-2. Epub 2020 Jun 24.

PubMed [citation]
PMID:
32581362
PMCID:
PMC7610553

Details of each submission

From NIHR Bioresource Rare Diseases, University of Cambridge, SCV001161961.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2021

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