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NM_000162.5(GCK):c.1146C>A (p.Cys382Ter) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 26, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000992037.1

Allele description [Variation Report for NM_000162.5(GCK):c.1146C>A (p.Cys382Ter)]

NM_000162.5(GCK):c.1146C>A (p.Cys382Ter)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1146C>A (p.Cys382Ter)
Other names:
NM_000162.5(GCK):c.1146C>A; p.Cys382Ter
HGVS:
  • NC_000007.14:g.44145604G>T
  • NG_008847.2:g.57567C>A
  • NM_000162.5:c.1146C>AMANE SELECT
  • NM_001354800.1:c.1146C>A
  • NM_001354801.1:c.135C>A
  • NM_001354802.1:c.6C>A
  • NM_001354803.2:c.180C>A
  • NM_033507.3:c.1149C>A
  • NM_033508.3:c.1143C>A
  • NP_000153.1:p.Cys382Ter
  • NP_001341729.1:p.Cys382Ter
  • NP_001341730.1:p.Cys45Ter
  • NP_001341731.1:p.Cys2Ter
  • NP_001341732.1:p.Cys60Ter
  • NP_277042.1:p.Cys383Ter
  • NP_277043.1:p.Cys381Ter
  • LRG_1074t1:c.1146C>A
  • LRG_1074t2:c.1149C>A
  • LRG_1074:g.57567C>A
  • LRG_1074p1:p.Cys382Ter
  • LRG_1074p2:p.Cys383Ter
  • NC_000007.13:g.44185203G>T
  • NM_000162.3:c.1146C>A
Protein change:
C2*
Links:
dbSNP: rs1583591809
NCBI 1000 Genomes Browser:
rs1583591809
Molecular consequence:
  • NM_000162.5:c.1146C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354800.1:c.1146C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354801.1:c.135C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354802.1:c.6C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354803.2:c.180C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033507.3:c.1149C>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_033508.3:c.1143C>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001144001Athena Diagnostics Inc
criteria provided, single submitter

(Athena Diagnostics Criteria)
Likely pathogenic
(Jun 26, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Athena Diagnostics Inc, SCV001144001.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The variant creates a premature nonsense codon, and is therefore predicted to result in the loss of a functional protein. Not found in the total gnomAD dataset, and the data is high quality (0/265258 chr).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024