NM_015404.4(WHRN):c.1992G>A (p.Pro664=) AND not provided

Clinical significance:Benign (Last evaluated: Nov 17, 2020)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000907763.4

Allele description [Variation Report for NM_015404.4(WHRN):c.1992G>A (p.Pro664=)]

NM_015404.4(WHRN):c.1992G>A (p.Pro664=)

Gene:
WHRN:whirlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q32
Genomic location:
Preferred name:
NM_015404.4(WHRN):c.1992G>A (p.Pro664=)
HGVS:
  • NC_000009.12:g.114406599C>T
  • NG_016700.1:g.103858G>A
  • NM_001083885.2:c.843G>A
  • NM_001173425.2:c.1992G>A
  • NM_001346890.1:c.939G>A
  • NM_015404.4:c.1992G>AMANE SELECT
  • NP_001077354.2:p.Pro281=
  • NP_001166896.1:p.Pro664=
  • NP_001333819.1:p.Pro313=
  • NP_056219.3:p.Pro664=
  • LRG_1094t1:c.1992G>A
  • LRG_1094:g.103858G>A
  • LRG_1094p1:p.Pro664=
  • NC_000009.11:g.117168879C>T
  • NM_015404.2:c.1992G>A
  • NM_015404.3:c.1992G>A
  • p.Pro664Pro
Links:
dbSNP: rs142568702
NCBI 1000 Genomes Browser:
rs142568702
Molecular consequence:
  • NM_001083885.2:c.843G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001173425.2:c.1992G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001346890.1:c.939G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_015404.4:c.1992G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Identifiers:
MedGen: CN517202

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001052488Invitaecriteria provided, single submitter
Benign
(Nov 17, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001803942GeneDxno assertion criteria provided
Likely benign
(Apr 14, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV001052488.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001803942.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 24, 2021

Support Center