U.S. flag

An official website of the United States government

NM_014844.5(TECPR2):c.3282G>A (p.Lys1094=) AND Hereditary spastic paraplegia 49

Germline classification:
Benign (2 submissions)
Last evaluated:
Jan 29, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000862353.9

Allele description [Variation Report for NM_014844.5(TECPR2):c.3282G>A (p.Lys1094=)]

NM_014844.5(TECPR2):c.3282G>A (p.Lys1094=)

Gene:
TECPR2:tectonin beta-propeller repeat containing 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q32.31
Genomic location:
Preferred name:
NM_014844.5(TECPR2):c.3282G>A (p.Lys1094=)
HGVS:
  • NC_000014.9:g.102449835G>A
  • NG_042851.1:g.91924G>A
  • NM_001172631.3:c.3282G>A
  • NM_014844.5:c.3282G>AMANE SELECT
  • NP_001166102.1:p.Lys1094=
  • NP_055659.2:p.Lys1094=
  • NC_000014.8:g.102916172G>A
  • NM_014844.3:c.3282G>A
Links:
dbSNP: rs199835341
NCBI 1000 Genomes Browser:
rs199835341
Molecular consequence:
  • NM_001172631.3:c.3282G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_014844.5:c.3282G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Hereditary spastic paraplegia 49 (HSAN9)
Synonyms:
Spastic paraplegia 49, autosomal recessive; NEUROPATHY, HEREDITARY SENSORY AND AUTONOMIC, TYPE IX, WITH DEVELOPMENTAL DELAY
Identifiers:
MONDO: MONDO:0014016; MedGen: C3542549; Orphanet: 320385; OMIM: 615031

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001002849Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Jan 29, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001461384Natera, Inc.
no assertion criteria provided
Uncertain significance
(Feb 13, 2020)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV001002849.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Natera, Inc., SCV001461384.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024