NM_000251.3(MSH2):c.942+25_942+29del AND not provided

Germline classification:: Likely benign (1 submission)
Last evaluated:: Aug 19, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000860492.7

Allele description [Variation Report for NM_000251.3(MSH2):c.942+25_942+29del]

NM_000251.3(MSH2):c.942+25_942+29del

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.942+25_942+29del

HGVS:

NC_000002.11:g.47641560_47641564del
NC_000002.12:g.47414443_47414447del
NG_007110.2:g.16320_16324del
NM_000251.3:c.942+25_942+29delMANE SELECT
NM_001258281.1:c.744+25_744+29del
LRG_218t1:c.942+11_942+15del
LRG_218:g.16320_16324del
NC_000002.11:g.47641560_47641564del
NC_000002.11:g.47641560_47641564delAAAAA
NC_000002.11:g.47641582_47641586del
NM_000251.2:c.942+11_942+15delAAAAA
NM_000251.2:c.942+3_942+7del
NM_000251.2:c.942+3_942+7delAAAAA
NM_000251.3:c.942+25_942+29delAAAAAMANE SELECT

Links:

dbSNP: rs11309117

NCBI 1000 Genomes Browser:

rs11309117

Molecular consequence:

NM_000251.3:c.942+25_942+29del - intron variant - [Sequence Ontology: SO:0001627]
NM_001258281.1:c.744+25_744+29del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001770490	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Aug 19, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001770490

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Aug 19, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001770490.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 28, 2024

ClinVar

Relating variation to medicine