NM_020549.4(CHAT):c.1634+177C>G AND not provided

Clinical significance:Benign (Last evaluated: Jun 16, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000841157.1

Allele description [Variation Report for NM_020549.4(CHAT):c.1634+177C>G]

NM_020549.4(CHAT):c.1634+177C>G

Gene:
CHAT:choline O-acetyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q11.23
Genomic location:
Preferred name:
NM_020549.4(CHAT):c.1634+177C>G
HGVS:
  • NC_000010.11:g.49652183C>G
  • NG_011797.1:g.48089C>G
  • NM_001142929.1:c.1280+177C>G
  • NM_001142933.1:c.1388+177C>G
  • NM_001142934.1:c.1280+177C>G
  • NM_020549.4:c.1634+177C>G
  • NM_020984.3:c.1280+177C>G
  • NM_020985.3:c.1280+177C>G
  • NM_020986.3:c.1280+177C>G
  • NC_000010.10:g.50860229C>G
Links:
dbSNP: rs10857521
NCBI 1000 Genomes Browser:
rs10857521
Molecular consequence:
  • NM_001142929.1:c.1280+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001142933.1:c.1388+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001142934.1:c.1280+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_020549.4:c.1634+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_020984.3:c.1280+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_020985.3:c.1280+177C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_020986.3:c.1280+177C>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000983115GeneDxcriteria provided, single submitter
Benign
(Jun 16, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000983115.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 27, 2021

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