NM_001164508.2(NEB):c.3443C>T (p.Ala1148Val) AND not provided

Germline classification:: Conflicting interpretations of pathogenicity (2 submissions)
Last evaluated:: Apr 29, 2019
Review status:: criteria provided, conflicting classifications

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000827155.5

Allele description [Variation Report for NM_001164508.2(NEB):c.3443C>T (p.Ala1148Val)]

NM_001164508.2(NEB):c.3443C>T (p.Ala1148Val)

Gene:

NEB:nebulin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q23.3

Genomic location:

Preferred name:

NM_001164508.2(NEB):c.3443C>T (p.Ala1148Val)

HGVS:

NC_000002.12:g.151678000G>A
NG_009382.2:g.61488C>T
NM_001164507.2:c.3443C>T
NM_001164508.2:c.3443C>TMANE SELECT
NM_001271208.2:c.3443C>T
NM_004543.5:c.3443C>T
NP_001157979.2:p.Ala1148Val
NP_001157980.2:p.Ala1148Val
NP_001258137.2:p.Ala1148Val
NP_004534.3:p.Ala1148Val
LRG_202t1:c.3443C>T
LRG_202:g.61488C>T
NC_000002.11:g.152534514G>A
NM_001271208.1:c.3443C>T
NM_004543.4:c.3443C>T

Protein change:

A1148V

Links:

dbSNP: rs200637566

NCBI 1000 Genomes Browser:

rs200637566

Molecular consequence:

NM_001164507.2:c.3443C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001164508.2:c.3443C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001271208.2:c.3443C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_004543.5:c.3443C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000968780	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Likely benign (May 10, 2018)	germline	clinical testing	Citation Link,
SCV003810293	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Apr 29, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000968780

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification (06012015))

Likely benign
(May 10, 2018)

germline

clinical testing

Citation Link,

SCV003810293

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Apr 29, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From GeneDx, SCV000968780.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Revvity Omics, Revvity, SCV003810293.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 16, 2024

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