U.S. flag

An official website of the United States government

  • delete

NM_004260.4(RECQL4):c.2296C>T (p.Arg766Trp) AND Baller-Gerold syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 8, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000815037.3

Allele description

NM_004260.4(RECQL4):c.2296C>T (p.Arg766Trp)

Gene:
RECQL4:RecQ like helicase 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_004260.4(RECQL4):c.2296C>T (p.Arg766Trp)
HGVS:
  • NC_000008.11:g.144513385G>A
  • NG_016430.1:g.9442C>T
  • NG_016430.2:g.9442C>T
  • NG_033083.1:g.421G>A
  • NM_004260.4:c.2296C>TMANE SELECT
  • NP_004251.3:p.Arg766Trp
  • NP_004251.4:p.Arg766Trp
  • LRG_277t1:c.2296C>T
  • LRG_277:g.9442C>T
  • LRG_277p1:p.Arg766Trp
  • NC_000008.10:g.145738769G>A
  • NM_004260.3:c.2296C>T
Protein change:
R766W
Links:
dbSNP: rs1586802958
NCBI 1000 Genomes Browser:
rs1586802958
Molecular consequence:
  • NM_004260.4:c.2296C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Baller-Gerold syndrome (BGS)
Synonyms:
Craniosynostosis radial aplasia syndrome; Craniosynostosis with radial defects
Identifiers:
MONDO: MONDO:0009039; MedGen: C0265308; Orphanet: 1225; OMIM: 218600

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000955478Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Oct 8, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV000955478.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This sequence change replaces arginine with tryptophan at codon 766 of the RECQL4 protein (p.Arg766Trp). The arginine residue is highly conserved and there is a moderate physicochemical difference between arginine and tryptophan. While this variant is present in population databases (rs751427839), the frequency information is unreliable, as metrics indicate poor data quality at this position in the ExAC database. This variant has not been reported in the literature in individuals with RECQL4-related conditions. ClinVar contains an entry for this variant (Variation ID: 658248). Experimental studies and prediction algorithms are not available or were not evaluated. The tryptophan amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022