NM_006415.4(SPTLC1):c.397T>C (p.Cys133Arg) AND Charcot-Marie-Tooth disease

Germline classification:: Uncertain significance (1 submission)
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000789582.1

Allele description [Variation Report for NM_006415.4(SPTLC1):c.397T>C (p.Cys133Arg)]

NM_006415.4(SPTLC1):c.397T>C (p.Cys133Arg)

Gene:

SPTLC1:serine palmitoyltransferase long chain base subunit 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q22.31

Genomic location:

Preferred name:

NM_006415.4(SPTLC1):c.397T>C (p.Cys133Arg)

HGVS:

NC_000009.12:g.92080046A>G
NG_007950.1:g.40363T>C
NM_001281303.2:c.397T>C
NM_001368272.1:c.-103T>C
NM_001368273.1:c.-69T>C
NM_006415.4:c.397T>CMANE SELECT
NM_178324.3:c.397T>C
NP_001268232.1:p.Cys133Arg
NP_006406.1:p.Cys133Arg
NP_847894.1:p.Cys133Arg
LRG_272:g.40363T>C
NC_000009.11:g.94842328A>G
NM_006415.3:c.397T>C
p.Cys133Arg

Protein change:

C133R

Links:

dbSNP: rs1587953587

NCBI 1000 Genomes Browser:

rs1587953587

Molecular consequence:

NM_001368272.1:c.-103T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001368273.1:c.-69T>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001281303.2:c.397T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_006415.4:c.397T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_178324.3:c.397T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Charcot-Marie-Tooth disease
Synonyms:: Charcot-Marie-Tooth Neuropathy
Identifiers:: MONDO: MONDO:0015626; MedGen: C0007959; OMIM: PS118220

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000928938	Inherited Neuropathy Consortium	no assertion criteria provided	Uncertain significance	germline	literature only	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000928938

Inherited Neuropathy Consortium

no assertion criteria provided

Uncertain significance

germline

literature only

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	literature only

Citations

PubMed

Characterization of two mutations in the SPTLC1 subunit of serine palmitoyltransferase associated with hereditary sensory and autonomic neuropathy type I.

Rotthier A, Penno A, Rautenstrauss B, Auer-Grumbach M, Stettner GM, Asselbergh B, Van Hoof K, Sticht H, Lévy N, Timmerman V, Hornemann T, Janssens K.

Hum Mutat. 2011 Jun;32(6):E2211-25. doi: 10.1002/humu.21481. Epub 2011 Feb 24.

PubMed [citation]

PMID:: 21618344

Details of each submission

From Inherited Neuropathy Consortium, SCV000928938.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	literature only	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 20, 2024

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