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NM_019055.6(ROBO4):c.2056+1G>T AND Aortic valve disease 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 9, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000787048.1

Allele description [Variation Report for NM_019055.6(ROBO4):c.2056+1G>T]

NM_019055.6(ROBO4):c.2056+1G>T

Gene:
ROBO4:roundabout guidance receptor 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q24.2
Genomic location:
Preferred name:
NM_019055.6(ROBO4):c.2056+1G>T
HGVS:
  • NC_000011.10:g.124887732C>A
  • NM_001301088.2:c.1621+1G>T
  • NM_019055.6:c.2056+1G>TMANE SELECT
  • NC_000011.9:g.124757628C>A
  • NM_019055.5:c.2056+1G>T
Nucleotide change:
IVS12DS, G-T, +1
Links:
OMIM: 607528.0001; dbSNP: rs764038221
NCBI 1000 Genomes Browser:
rs764038221
Molecular consequence:
  • NM_001301088.2:c.1621+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_019055.6:c.2056+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Aortic valve disease 3
Identifiers:
MONDO: MONDO:0032783; MedGen: C5193127; OMIM: 618496

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000925971OMIM
no assertion criteria provided
Pathogenic
(Jul 9, 2019)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

ROBO4 variants predispose individuals to bicuspid aortic valve and thoracic aortic aneurysm.

Gould RA, Aziz H, Woods CE, Seman-Senderos MA, Sparks E, Preuss C, Wünnemann F, Bedja D, Moats CR, McClymont SA, Rose R, Sobreira N, Ling H, MacCarrick G, Kumar AA, Luyckx I, Cannaerts E, Verstraeten A, Björk HM, Lehsau AC, Jaskula-Ranga V, Lauridsen H, et al.

Nat Genet. 2019 Jan;51(1):42-50. doi: 10.1038/s41588-018-0265-y. Epub 2018 Nov 19.

PubMed [citation]
PMID:
30455415
PMCID:
PMC6309588

Details of each submission

From OMIM, SCV000925971.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 7 males and 1 female over 3 generations of a family (family 1) with aortic root aneurysm, either isolated or in association with distal ascending aortic aneurysm, aortic valve stenosis, and/or bicuspid aortic valve (AOVD3; 618496), Gould et al. (2019) identified heterozygosity for a c.2056+1G-T transversion (c.2056+1G-T, NM_019055.5) in intron 12 of the ROBO4 gene. Analysis of cDNA from patient and control fibroblasts showed that the splicing mutation causes skipping of exon 13, resulting in an in-frame transcript encoding a protein missing 36 amino acids from the intracellular domain. The mutation was also present in 2 clinically unaffected female family members, indicating reduced penetrance, but was absent from the ExAC database. Immunofluorescence analysis of patient aorta showed reduced expression in the endothelium compared to control, and there was infiltration of ROBO4(+) cells into the aortic media, which was not seen in controls. Immunostaining for albumin showed substantial penetration into the aortic intima of the patient, whereas it was restricted to the endothelial surface in control aorta. Histologic analyses showed a strong fibroproliferative response in the intima and superficial medial layer of patient aorta, with increased cellularity and accumulation of collagen, as well as decreased elastin content and fragmentation and disarray of elastic fibers in the superficial media. Gould et al. (2019) suggested that ROBO4 variants disrupt endothelial cellular performance and barrier function, contributing to pathologic remodeling of the aortic media. In transiently transfected cultured human aortic endothelial cells, dextran permeability assay showed loss of endothelial barrier function, associated with downregulation of TJP1 (601009) and VE-cadherin (CDH5; 601120); there was also induction of expression of alpha-SMA (ACTC1; 102540) and SNAI1 (604238), with cellular elongation and invasion. The authors also noted a modest decline in BMP (see 112264) and NOTCH (see 190198) activity, with no change in TGF-beta (190180) responses. Mice with Robo4 lacking exon 13 presented an incompletely penetrant complex cardiovascular phenotype that included aortic valve defects and dysfunction as well as aneurysm of the ascending aorta: at 20 weeks of age, 1 (3.2%) of 31 heterozygous males and 4 (11.4%) of 31 homozygous male mice were affected, compared to none of the wildtype males (p less than 0.05).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2023