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NM_006941.4(SOX10):c.428+2T>C AND Waardenburg syndrome type 2E

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 14, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000787014.10

Allele description [Variation Report for NM_006941.4(SOX10):c.428+2T>C]

NM_006941.4(SOX10):c.428+2T>C

Genes:
POLR2F:RNA polymerase II, I and III subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box transcription factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.4(SOX10):c.428+2T>C
HGVS:
  • NC_000022.11:g.37983355A>G
  • NG_007948.1:g.6178T>C
  • NG_148296.1:g.632A>G
  • NM_001301130.2:c.294-2799A>G
  • NM_001301131.2:c.293+16185A>G
  • NM_001363825.1:c.*38+11045A>G
  • NM_006941.4:c.428+2T>CMANE SELECT
  • LRG_271:g.6178T>C
  • NC_000022.10:g.38379362A>G
Links:
dbSNP: rs1601886662
NCBI 1000 Genomes Browser:
rs1601886662
Molecular consequence:
  • NM_001301130.2:c.294-2799A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301131.2:c.293+16185A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363825.1:c.*38+11045A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006941.4:c.428+2T>C - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Waardenburg syndrome type 2E (WS2E)
Synonyms:
WAARDENBURG SYNDROME, TYPE 2E, WITH OR WITHOUT NEUROLOGIC INVOLVEMENT; WS2E, WITH OR WITHOUT NEUROLOGIC INVOLVEMENT; HYPOGONADOTROPIC HYPOGONADISM WITH ANOSMIA AND DEAFNESS, WITH OR WITHOUT HYPOPIGMENTATION
Identifiers:
MONDO: MONDO:0012698; MedGen: C2700405; Orphanet: 3440; OMIM: 611584

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000925923Bioscientia Institut fuer Medizinische Diagnostik GmbH, Sonic Healthcare
no assertion criteria provided
Likely pathogenic
(Jan 14, 2019)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Bioscientia Institut fuer Medizinische Diagnostik GmbH, Sonic Healthcare, SCV000925923.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 13, 2025