NM_000199.5(SGSH):c.1076C>T (p.Ala359Val) AND not provided

Clinical significance:Uncertain significance (Last evaluated: Jan 15, 2019)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000782079.1

Allele description [Variation Report for NM_000199.5(SGSH):c.1076C>T (p.Ala359Val)]

NM_000199.5(SGSH):c.1076C>T (p.Ala359Val)

Gene:
SGSH:N-sulfoglucosamine sulfohydrolase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q25.3
Genomic location:
Preferred name:
NM_000199.5(SGSH):c.1076C>T (p.Ala359Val)
HGVS:
  • NC_000017.11:g.80210885G>A
  • NG_008229.1:g.14516C>T
  • NG_032778.1:g.45894G>A
  • NM_000199.5:c.1076C>TMANE SELECT
  • NM_001352921.2:c.*163C>T
  • NM_001352922.2:c.*126C>T
  • NP_000190.1:p.Ala359Val
  • LRG_1330:g.45894G>A
  • NC_000017.10:g.78184684G>A
  • NM_000199.3:c.1076C>T
  • NR_148201.2:n.990C>T
Protein change:
A359V
Links:
dbSNP: rs202150579
NCBI 1000 Genomes Browser:
rs202150579
Molecular consequence:
  • NM_001352921.2:c.*163C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001352922.2:c.*126C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000199.5:c.1076C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148201.2:n.990C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000920550Laboratory of Molecular Genetics (Pr. Bezieau's lab), CHU de Nantescriteria provided, single submitter
Uncertain significance
(Jan 15, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratory of Molecular Genetics (Pr. Bezieau's lab), CHU de Nantes, SCV000920550.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 27, 2021

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