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NM_031307.4(PUS3):c.578G>A (p.Arg193Gln) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 18, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000779646.2

Allele description [Variation Report for NM_031307.4(PUS3):c.578G>A (p.Arg193Gln)]

NM_031307.4(PUS3):c.578G>A (p.Arg193Gln)

Genes:
HYLS1:HYLS1 centriolar and ciliogenesis associated [Gene - OMIM - HGNC]
PUS3:pseudouridine synthase 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q24.2
Genomic location:
Preferred name:
NM_031307.4(PUS3):c.578G>A (p.Arg193Gln)
HGVS:
  • NC_000011.10:g.125895590C>T
  • NG_011842.1:g.16977C>T
  • NG_033067.1:g.12632G>A
  • NG_033067.2:g.12616G>A
  • NM_001134793.2:c.-25-3754C>TMANE SELECT
  • NM_001271985.2:c.-47G>A
  • NM_001377269.1:c.-25-3754C>T
  • NM_001377270.1:c.-22-3757C>T
  • NM_001424364.1:c.-22-3757C>T
  • NM_031307.4:c.578G>AMANE SELECT
  • NM_145014.3:c.-80-3514C>T
  • NP_112597.4:p.Arg193Gln
  • NC_000011.9:g.125765485C>T
  • NM_031307.3:c.578G>A
Protein change:
R193Q
Links:
dbSNP: rs576405108
NCBI 1000 Genomes Browser:
rs576405108
Molecular consequence:
  • NM_001271985.2:c.-47G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001134793.2:c.-25-3754C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377269.1:c.-25-3754C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001377270.1:c.-22-3757C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001424364.1:c.-22-3757C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_145014.3:c.-80-3514C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_031307.4:c.578G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Severe growth deficiency-strabismus-extensive dermal melanocytosis-intellectual disability syndrome (NEDMIGS)
Synonyms:
NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY AND GRAY SCLERAE
Identifiers:
MONDO: MONDO:0014886; MedGen: C4310745; OMIM: 617051
Name:
Genetic syndrome with a Dandy-Walker malformation as major feature
Identifiers:
MedGen: CN274613

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000916325Dobyns Lab, Seattle Children's Research Institute
no assertion criteria provided
Likely pathogenic
(Feb 18, 2019)
germlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Caucasiangermlineyes1not providednot providednot providednot providedresearch

Details of each submission

From Dobyns Lab, Seattle Children's Research Institute, SCV000916325.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Caucasian1not providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Aug 30, 2025