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NM_000350.3(ABCA4):c.203C>G (p.Pro68Arg) AND ABCA4-Related Disorders

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 2, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000779008.4

Allele description [Variation Report for NM_000350.3(ABCA4):c.203C>G (p.Pro68Arg)]

NM_000350.3(ABCA4):c.203C>G (p.Pro68Arg)

Gene:
ABCA4:ATP binding cassette subfamily A member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p22.1
Genomic location:
Preferred name:
NM_000350.3(ABCA4):c.203C>G (p.Pro68Arg)
HGVS:
  • NC_000001.11:g.94111537G>C
  • NG_009073.1:g.14613C>G
  • NG_009073.2:g.14611C>G
  • NM_000350.3:c.203C>GMANE SELECT
  • NM_001425324.1:c.203C>G
  • NP_000341.2:p.Pro68Arg
  • NP_001412253.1:p.Pro68Arg
  • NC_000001.10:g.94577093G>C
  • NM_000350.2:c.203C>G
  • P78363:p.Pro68Arg
Protein change:
P68R
Links:
UniProtKB: P78363#VAR_012499; dbSNP: rs62654397
NCBI 1000 Genomes Browser:
rs62654397
Molecular consequence:
  • NM_000350.3:c.203C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001425324.1:c.203C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
ABCA4-Related Disorders
Identifiers:
MedGen: CN239167

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000915449Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Likely pathogenic
(Oct 2, 2017)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutation Spectrum of the ABCA4 Gene in 335 Stargardt Disease Patients From a Multicenter German Cohort-Impact of Selected Deep Intronic Variants and Common SNPs.

Schulz HL, Grassmann F, Kellner U, Spital G, Rüther K, Jägle H, Hufendiek K, Rating P, Huchzermeyer C, Baier MJ, Weber BH, Stöhr H.

Invest Ophthalmol Vis Sci. 2017 Jan 1;58(1):394-403. doi: 10.1167/iovs.16-19936.

PubMed [citation]
PMID:
28118664
PMCID:
PMC5270621

Genotype/Phenotype analysis of a photoreceptor-specific ATP-binding cassette transporter gene, ABCR, in Stargardt disease.

Lewis RA, Shroyer NF, Singh N, Allikmets R, Hutchinson A, Li Y, Lupski JR, Leppert M, Dean M.

Am J Hum Genet. 1999 Feb;64(2):422-34.

PubMed [citation]
PMID:
9973280
PMCID:
PMC1377752
See all PubMed Citations (5)

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000915449.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

TheABCA4 c.203C>G (p.Pro68Arg) missense variant has been reported in three studies in which it is identified in four individuals, including a sibling pair, with recessively inherited Stargardt disease, all in a compound heterozygous state with a second missense variant (Shroyer et al. 2000; Cideciyan et al. 2012; Schulz et al. 2017). The mother of the affected siblings was diagnosed with age-related macular degeneration and carried the p.Pro68Arg variant in a heterozygous state (Shroyer et al. 2000). The variant was absent from 440 control chromosomes (Lewis et al. 1999) and is reported at a frequency of 0.00007 in the European (non-Finnish) population of the Genome Aggregation Database, but this is based on one allele so the variant is presumed to be rare. Another missense variant at the same amino acid position (p.Pro68Leu) has also been seen in individuals with ABCA4-related conditions, including at least one individual with Stargardt disease who carried the variant in a compound heterozygous state (Rivera et al. 2000). Based on the collective evidence, the p.Pro68Arg variant is classified as likely pathogenic for ABCA4-related disorders. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 30, 2024