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NM_000535.7(PMS2):c.23+6C>A AND Hereditary cancer-predisposing syndrome

Germline classification:
Likely benign (1 submission)
Last evaluated:
Nov 21, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000775372.2

Allele description [Variation Report for NM_000535.7(PMS2):c.23+6C>A]

NM_000535.7(PMS2):c.23+6C>A

Gene:
PMS2:PMS1 homolog 2, mismatch repair system component [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p22.1
Genomic location:
Preferred name:
NM_000535.7(PMS2):c.23+6C>A
HGVS:
  • NC_000007.14:g.6008991G>T
  • NG_008466.1:g.5116C>A
  • NG_050738.1:g.4741G>T
  • NM_000535.7:c.23+6C>AMANE SELECT
  • NM_001322003.2:c.-378+6C>A
  • NM_001322004.2:c.-243+6C>A
  • NM_001322005.2:c.-567C>A
  • NM_001322006.2:c.23+6C>A
  • NM_001322007.2:c.-193+6C>A
  • NM_001322008.2:c.-53+6C>A
  • NM_001322009.2:c.-562C>A
  • NM_001322010.2:c.-243+6C>A
  • NM_001322011.2:c.-862+6C>A
  • NM_001322012.2:c.-857+6C>A
  • NM_001322013.2:c.-378+6C>A
  • NM_001322014.2:c.23+6C>A
  • NM_001322015.2:c.-457+6C>A
  • LRG_161t1:c.23+6C>A
  • LRG_161:g.5116C>A
  • NC_000007.13:g.6048622G>T
  • NM_000535.5:c.23+6C>A
  • NM_000535.6:c.23+6C>A
Links:
dbSNP: rs779104357
NCBI 1000 Genomes Browser:
rs779104357
Molecular consequence:
  • NM_001322005.2:c.-567C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001322009.2:c.-562C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000535.7:c.23+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322003.2:c.-378+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322004.2:c.-243+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322006.2:c.23+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322007.2:c.-193+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322008.2:c.-53+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322010.2:c.-243+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322011.2:c.-862+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322012.2:c.-857+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322013.2:c.-378+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322014.2:c.23+6C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001322015.2:c.-457+6C>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000909687Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Nov 21, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV000909687.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 28, 2024