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NM_020433.5(JPH2):c.458T>C (p.Val153Ala) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 11, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000767063.9

Allele description [Variation Report for NM_020433.5(JPH2):c.458T>C (p.Val153Ala)]

NM_020433.5(JPH2):c.458T>C (p.Val153Ala)

Gene:
JPH2:junctophilin 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.12
Genomic location:
Preferred name:
NM_020433.5(JPH2):c.458T>C (p.Val153Ala)
Other names:
p.V153A:GTG>GCG
HGVS:
  • NC_000020.11:g.44160329A>G
  • NG_031867.1:g.32250T>C
  • NM_020433.5:c.458T>CMANE SELECT
  • NP_065166.2:p.Val153Ala
  • NP_065166.2:p.Val153Ala
  • LRG_394t1:c.458T>C
  • LRG_394:g.32250T>C
  • LRG_394p1:p.Val153Ala
  • NC_000020.10:g.42788969A>G
  • NM_020433.4:c.458T>C
  • NM_175913.3:c.*17633T>C
Protein change:
V153A
Links:
dbSNP: rs776045429
NCBI 1000 Genomes Browser:
rs776045429
Molecular consequence:
  • NM_020433.5:c.458T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000235926GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Mar 11, 2014)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000235926.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The V153A variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. The V153A variant was not observed in approximately 6,000 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. Nevertheless, the V153A variant is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. This substitution occurs at a position that is not conserved across species. In silico analysis predicts this variant likely does not alter the protein structure/function. No missense mutations in nearby residues have been reported in association with cardiomyopathy, indicating this region of the protein may be tolerant of change. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. This variant is found in the CARDIOMYOPATHY panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 4, 2025