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NM_016203.4(PRKAG2):c.1006G>A (p.Val336Ile) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 5, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000766635.1

Allele description [Variation Report for NM_016203.4(PRKAG2):c.1006G>A (p.Val336Ile)]

NM_016203.4(PRKAG2):c.1006G>A (p.Val336Ile)

Gene:
PRKAG2:protein kinase AMP-activated non-catalytic subunit gamma 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_016203.4(PRKAG2):c.1006G>A (p.Val336Ile)
Other names:
p.V336I:GTA>ATA
HGVS:
  • NC_000007.14:g.151572709C>T
  • NG_007486.2:g.309523G>A
  • NM_001040633.2:c.874G>A
  • NM_001304527.2:c.631G>A
  • NM_001304531.2:c.283G>A
  • NM_001363698.2:c.634G>A
  • NM_016203.4:c.1006G>AMANE SELECT
  • NM_024429.2:c.283G>A
  • NP_001035723.1:p.Val292Ile
  • NP_001035723.1:p.Val292Ile
  • NP_001291456.1:p.Val211Ile
  • NP_001291460.1:p.Val95Ile
  • NP_001350627.1:p.Val212Ile
  • NP_057287.2:p.Val336Ile
  • NP_077747.1:p.Val95Ile
  • LRG_430t1:c.1006G>A
  • LRG_430:g.309523G>A
  • LRG_430p1:p.Val336Ile
  • NC_000007.13:g.151269795C>T
  • NG_007486.1:g.309522G>A
  • NM_001040633.1:c.874G>A
  • NM_016203.3:c.1006G>A
Protein change:
V211I
Links:
dbSNP: rs727504707
NCBI 1000 Genomes Browser:
rs727504707
Molecular consequence:
  • NM_001040633.2:c.874G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304527.2:c.631G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304531.2:c.283G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363698.2:c.634G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016203.4:c.1006G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024429.2:c.283G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000208950GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Oct 5, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000208950.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The V336I variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. However, it has been seen in one other individual referred for HCM testing at GeneDx, and is classified in ClinVar as a variant of uncertain significance by an outside laboratory (SCV000205703.3; Landrum et al., 2016). The V336I variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. This substitution occurs at a position that is conserved across species. Nonetheless, V336I is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. Finally, in silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function.Therefore, based on the currently available information, it is unclear whether this variant is pathogenic or rare benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024