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NM_006516.4(SLC2A1):c.188C>T (p.Thr63Met) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 31, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000763915.2

Allele description [Variation Report for NM_006516.4(SLC2A1):c.188C>T (p.Thr63Met)]

NM_006516.4(SLC2A1):c.188C>T (p.Thr63Met)

Gene:
SLC2A1:solute carrier family 2 member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.2
Genomic location:
Preferred name:
NM_006516.4(SLC2A1):c.188C>T (p.Thr63Met)
HGVS:
  • NC_000001.11:g.42931133G>A
  • NG_008232.1:g.33044C>T
  • NM_006516.3:c.188C>T
  • NM_006516.4:c.188C>TMANE SELECT
  • NP_006507.2:p.Thr63Met
  • LRG_1132t1:c.188C>T
  • LRG_1132:g.33044C>T
  • NC_000001.10:g.43396804G>A
  • NM_006516.2:c.188C>T
  • NM_006516.4:c.188C>T
Protein change:
T63M
Links:
dbSNP: rs200828053
NCBI 1000 Genomes Browser:
rs200828053
Molecular consequence:
  • NM_006516.4:c.188C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cryohydrocytosis with reduced stomatin
Synonyms:
Stomatin-deficient cryohydrocytosis with neurologic defects; GLUT1 DEFICIENCY SYNDROME WITH PSEUDOHYPERKALEMIA AND HEMOLYSIS
Identifiers:
MONDO: MONDO:0012143; MedGen: C1837206; Orphanet: 168577; OMIM: 608885
Name:
Dystonia 9 (DYT9)
Synonyms:
CHOREOATHETOSIS, KINESIGENIC, WITH EPISODIC ATAXIA AND SPASTICITY
Identifiers:
MONDO: MONDO:0010983; MedGen: C1832855; OMIM: 601042
Name:
Encephalopathy due to GLUT1 deficiency
Synonyms:
GLUCOSE TRANSPORT DEFECT, BLOOD-BRAIN BARRIER; De Vivo disease; Glucose transporter protein syndrome; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011724; MedGen: C4551966; Orphanet: 71277; OMIM: 606777
Name:
Childhood onset GLUT1 deficiency syndrome 2
Synonyms:
PAROXYSMAL EXERCISE-INDUCED DYSKINESIA WITH OR WITHOUT EPILEPSY AND/OR HEMOLYTIC ANEMIA; PAROXYSMAL EXERTION-INDUCED DYSTONIA WITH OR WITHOUT EPILEPSY AND/OR HEMOLYTIC ANEMIA; PED WITH OR WITHOUT EPILEPSY AND/OR HEMOLYTIC ANEMIA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0012805; MedGen: C1842534; Orphanet: 98811; OMIM: 612126
Name:
Epilepsy, idiopathic generalized, susceptibility to, 12 (EIG12)
Identifiers:
MONDO: MONDO:0013919; MedGen: C3553859; OMIM: 614847

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000894859Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Oct 31, 2018)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753
PMC

Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL.

Genetics in medicine : official journal of the American College of Medical Genetics. 2015 Mar 5; 17(5): 405-424

PMC [article]
PMCID:
PMC4544753
PMID:
25741868
DOI:
10.1038/gim.2015.30

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV000894859.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 19, 2025