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NM_012233.3(RAB3GAP1):c.1237-2A>G AND Warburg micro syndrome 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 30, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000761455.2

Allele description [Variation Report for NM_012233.3(RAB3GAP1):c.1237-2A>G]

NM_012233.3(RAB3GAP1):c.1237-2A>G

Gene:
RAB3GAP1:RAB3 GTPase activating protein catalytic subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q21.3
Genomic location:
Preferred name:
NM_012233.3(RAB3GAP1):c.1237-2A>G
HGVS:
  • NC_000002.12:g.135132893A>G
  • NG_016972.1:g.85629A>G
  • NG_016972.2:g.85603A>G
  • NM_001172435.2:c.1237-2A>G
  • NM_012233.3:c.1237-2A>GMANE SELECT
  • NC_000002.11:g.135890463A>G
  • NM_012233.2:c.1237-2A>G
Links:
dbSNP: rs1558792168
NCBI 1000 Genomes Browser:
rs1558792168
Molecular consequence:
  • NM_001172435.2:c.1237-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_012233.3:c.1237-2A>G - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Name:
Warburg micro syndrome 1 (WARBM1)
Synonyms:
Microcephaly, microcornea, congenital cataract, mental retardation, optic atrophy and hypogenitalism
Identifiers:
MONDO: MONDO:0010822; MedGen: C1838625; Orphanet: 2510; OMIM: 600118

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000891548Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Dec 30, 2017) 		unknowncuration

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedcuration

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University, SCV000891548.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 10, 2023