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NM_000038.6(APC):c.4420G>A (p.Ala1474Thr) AND not provided

Germline classification:
Benign/Likely benign (3 submissions)
Last evaluated:
Jul 8, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000759431.15

Allele description [Variation Report for NM_000038.6(APC):c.4420G>A (p.Ala1474Thr)]

NM_000038.6(APC):c.4420G>A (p.Ala1474Thr)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.4420G>A (p.Ala1474Thr)
Other names:
p.A1474T:GCT>ACT; NM_000038.6(APC):c.4420G>A
HGVS:
  • NC_000005.10:g.112840014G>A
  • NG_008481.4:g.152494G>A
  • NM_000038.6:c.4420G>AMANE SELECT
  • NM_001127510.3:c.4420G>A
  • NM_001127511.3:c.4366G>A
  • NM_001354895.2:c.4420G>A
  • NM_001354896.2:c.4474G>A
  • NM_001354897.2:c.4450G>A
  • NM_001354898.2:c.4345G>A
  • NM_001354899.2:c.4336G>A
  • NM_001354900.2:c.4297G>A
  • NM_001354901.2:c.4243G>A
  • NM_001354902.2:c.4147G>A
  • NM_001354903.2:c.4117G>A
  • NM_001354904.2:c.4042G>A
  • NM_001354905.2:c.3940G>A
  • NM_001354906.2:c.3571G>A
  • NP_000029.2:p.Ala1474Thr
  • NP_001120982.1:p.Ala1474Thr
  • NP_001120983.2:p.Ala1456Thr
  • NP_001341824.1:p.Ala1474Thr
  • NP_001341825.1:p.Ala1492Thr
  • NP_001341826.1:p.Ala1484Thr
  • NP_001341827.1:p.Ala1449Thr
  • NP_001341828.1:p.Ala1446Thr
  • NP_001341829.1:p.Ala1433Thr
  • NP_001341830.1:p.Ala1415Thr
  • NP_001341831.1:p.Ala1383Thr
  • NP_001341832.1:p.Ala1373Thr
  • NP_001341833.1:p.Ala1348Thr
  • NP_001341834.1:p.Ala1314Thr
  • NP_001341835.1:p.Ala1191Thr
  • LRG_130t1:c.4420G>A
  • LRG_130:g.152494G>A
  • NC_000005.9:g.112175711G>A
  • NM_000038.4:c.4420G>A
  • NM_000038.5:c.4420G>A
  • NM_001127510.2:c.4420G>A
  • p.A1474T
Protein change:
A1191T
Links:
dbSNP: rs139387758
NCBI 1000 Genomes Browser:
rs139387758
Molecular consequence:
  • NM_000038.6:c.4420G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.4420G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.4366G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.4420G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.4474G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.4450G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.4345G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.4336G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.4297G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.4243G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.4147G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.4117G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.4042G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.3940G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.3571G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000167009GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Dec 4, 2018)
germlineclinical testing

Citation Link,

SCV000888745Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Benign
(Jul 8, 2022)
unknownclinical testing

PubMed (12)
[See all records that cite these PMIDs]

SCV005219839Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benigngermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing, not provided
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The mutational repertoire of uterine sarcomas and carcinosarcomas in a Brazilian cohort: A preliminary study.

da Costa LT, Dos Anjos LG, Kagohara LT, Torrezan GT, De Paula CAA, Baracat EC, Carraro DM, Carvalho KC.

Clinics (Sao Paulo). 2021;76:e2324. doi: 10.6061/clinics/2021/e2324.

PubMed [citation]
PMID:
33503190
PMCID:
PMC7798418

Multiple rare nonsynonymous variants in the adenomatous polyposis coli gene predispose to colorectal adenomas.

Azzopardi D, Dallosso AR, Eliason K, Hendrickson BC, Jones N, Rawstorne E, Colley J, Moskvina V, Frye C, Sampson JR, Wenstrup R, Scholl T, Cheadle JP.

Cancer Res. 2008 Jan 15;68(2):358-63. doi: 10.1158/0008-5472.CAN-07-5733.

PubMed [citation]
PMID:
18199528
See all PubMed Citations (13)

Details of each submission

From GeneDx, SCV000167009.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 18199528, 24728327, 24055113, 24861525, 25637381, 21859464, 26332594)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000888745.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (12)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005219839.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024