NM_001077365.2(POMT1):c.1163G>A (p.Arg388His) AND not provided

Clinical significance:Uncertain significance (Last evaluated: Jul 17, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000728233.1

Allele description [Variation Report for NM_001077365.2(POMT1):c.1163G>A (p.Arg388His)]

NM_001077365.2(POMT1):c.1163G>A (p.Arg388His)

Gene:
POMT1:protein O-mannosyltransferase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.13
Genomic location:
Preferred name:
NM_001077365.2(POMT1):c.1163G>A (p.Arg388His)
HGVS:
  • NC_000009.12:g.131513319G>A
  • NG_008896.1:g.15418G>A
  • NM_001077365.2:c.1163G>AMANE SELECT
  • NM_001077366.2:c.1001G>A
  • NM_001136113.2:c.1163G>A
  • NM_001136114.2:c.812G>A
  • NM_001353193.2:c.1229G>A
  • NM_001353194.2:c.1001G>A
  • NM_001353195.2:c.812G>A
  • NM_001353196.2:c.1073G>A
  • NM_001353197.2:c.1067G>A
  • NM_001353198.2:c.1067G>A
  • NM_001353199.2:c.878G>A
  • NM_001353200.2:c.707G>A
  • NM_001374689.1:c.1151G>A
  • NM_001374690.1:c.1163G>A
  • NM_001374691.1:c.812G>A
  • NM_001374692.1:c.812G>A
  • NM_001374693.1:c.824+1852G>A
  • NM_001374695.1:c.773G>A
  • NM_007171.3:c.1229G>A
  • NM_007171.4:c.1229G>A
  • NP_001070833.1:p.Arg388His
  • NP_001070834.1:p.Arg334His
  • NP_001129585.1:p.Arg388His
  • NP_001129586.1:p.Arg271His
  • NP_001340122.2:p.Arg410His
  • NP_001340123.1:p.Arg334His
  • NP_001340124.1:p.Arg271His
  • NP_001340125.1:p.Arg358His
  • NP_001340126.2:p.Arg356His
  • NP_001340127.2:p.Arg356His
  • NP_001340128.2:p.Arg293His
  • NP_001340129.1:p.Arg236His
  • NP_001361618.1:p.Arg384His
  • NP_001361619.1:p.Arg388His
  • NP_001361620.1:p.Arg271His
  • NP_001361621.1:p.Arg271His
  • NP_001361624.1:p.Arg258His
  • NP_009102.3:p.Arg410His
  • NP_009102.4:p.Arg410His
  • LRG_842t1:c.1229G>A
  • LRG_842t2:c.1163G>A
  • LRG_842p1:p.Arg410His
  • LRG_842p2:p.Arg388His
  • NC_000009.11:g.134388706G>A
  • NR_148391.2:n.1197G>A
  • NR_148392.2:n.1415G>A
  • NR_148393.2:n.1197G>A
  • NR_148394.2:n.1090G>A
  • NR_148395.2:n.1349G>A
  • NR_148396.2:n.983G>A
  • NR_148397.2:n.1247G>A
  • NR_148398.2:n.1202G>A
  • NR_148399.2:n.1589G>A
  • NR_148400.2:n.1188G>A
Protein change:
R236H
Links:
dbSNP: rs138640226
NCBI 1000 Genomes Browser:
rs138640226
Molecular consequence:
  • NM_001374693.1:c.824+1852G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001077365.2:c.1163G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001077366.2:c.1001G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136113.2:c.1163G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136114.2:c.812G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353193.2:c.1229G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353194.2:c.1001G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353195.2:c.812G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353196.2:c.1073G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353197.2:c.1067G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353198.2:c.1067G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353199.2:c.878G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353200.2:c.707G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374689.1:c.1151G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374690.1:c.1163G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374691.1:c.812G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374692.1:c.812G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374695.1:c.773G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007171.3:c.1229G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007171.4:c.1229G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148391.2:n.1197G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148392.2:n.1415G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148393.2:n.1197G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148394.2:n.1090G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148395.2:n.1349G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148396.2:n.983G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148397.2:n.1247G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148398.2:n.1202G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148399.2:n.1589G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148400.2:n.1188G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
1

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000855779EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Uncertain significance
(Jul 17, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000855779.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Jun 14, 2021

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