NM_000023.4(SGCA):c.366G>A (p.Leu122=) AND not provided

Clinical significance:Conflicting interpretations of pathogenicity, Likely benign(1);Uncertain significance(1) (Last evaluated: Feb 28, 2019)

Review status:1 star out of maximum of 4 stars

criteria provided, conflicting interpretations

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000726142.4

Allele description [Variation Report for NM_000023.4(SGCA):c.366G>A (p.Leu122=)]

NM_000023.4(SGCA):c.366G>A (p.Leu122=)

Gene:
SGCA:sarcoglycan alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.33
Genomic location:
Preferred name:
NM_000023.4(SGCA):c.366G>A (p.Leu122=)
HGVS:
  • NC_000017.11:g.50168000G>A
  • NG_008889.1:g.6996G>A
  • NM_000023.4:c.366G>AMANE SELECT
  • NM_001135697.3:c.366G>A
  • NP_000014.1:p.Leu122=
  • NP_001129169.1:p.Leu122=
  • LRG_203t1:c.366G>A
  • LRG_203:g.6996G>A
  • NC_000017.10:g.48245361G>A
  • NM_000023.2:c.366G>A
  • NM_000023.3:c.366G>A
  • NR_135553.2:n.402G>A
Links:
dbSNP: rs147739328
NCBI 1000 Genomes Browser:
rs147739328
Molecular consequence:
  • NR_135553.2:n.402G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000023.4:c.366G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001135697.3:c.366G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
2

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000701255EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Uncertain significance
(Oct 25, 2016)
germlineclinical testing

Citation Link,

SCV001145586Athena Diagnostics Inccriteria provided, single submitter
Likely benign
(Feb 28, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown2not providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000701255.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided2not providednot providednot provided

From Athena Diagnostics Inc, SCV001145586.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 14, 2021

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