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NM_000744.7(CHRNA4):c.1327C>G (p.His443Asp) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Sep 11, 2018
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000725077.5

Allele description [Variation Report for NM_000744.7(CHRNA4):c.1327C>G (p.His443Asp)]

NM_000744.7(CHRNA4):c.1327C>G (p.His443Asp)

Gene:
CHRNA4:cholinergic receptor nicotinic alpha 4 subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_000744.7(CHRNA4):c.1327C>G (p.His443Asp)
Other names:
p.H443D:CAC>GAC
HGVS:
  • NC_000020.11:g.63350084G>C
  • NG_011931.1:g.16260C>G
  • NM_000744.7:c.1327C>GMANE SELECT
  • NM_001256573.2:c.799C>G
  • NP_000735.1:p.His443Asp
  • NP_000735.1:p.His443Asp
  • NP_001243502.1:p.His267Asp
  • NC_000020.10:g.61981436G>C
  • NM_000744.5:c.1327C>G
  • NM_000744.6:c.1327C>G
  • NR_046317.2:n.1536C>G
Protein change:
H267D
Links:
dbSNP: rs796052319
NCBI 1000 Genomes Browser:
rs796052319
Molecular consequence:
  • NM_000744.7:c.1327C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001256573.2:c.799C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_046317.2:n.1536C>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000240514GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Sep 11, 2018)
germlineclinical testing

Citation Link,

SCV000333802Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Aug 6, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown2not providednot providednot providednot providedclinical testing
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000240514.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.His443Asp (CAC>GAC): c.1327 C>G in exon 5 of the CHRNA4 gene (NM_000744.5)The His443Asp missense change has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. It was not observed in approximately 6,200 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. This variant is a non-conservative amino acid substitution of a positively charged Histidine residue with a negatively charged Aspartic acid residue. However, His443Asp alters a poorly conserved position in the topological domain of the CHRNA4 protein and in silico analysis predicts this variant likely has a benign effect on the protein structure/function. In addition, the His443Asp amino acid substitution does not occur within the transmembrane region of the protein where most pathogenic missense mutations have been identified in association with epilepsy (Steinlein et al., 2010). Therefore, based on the currently available information, it is unclear whether His443Asp is a disease-causing mutation or a rare benign variant. The variant is found in EPILEPSY panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000333802.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided2not providednot providednot provided

Last Updated: Feb 28, 2024