NM_000520.6(HEXA):c.1527-6T>C AND not provided

Clinical significance:Conflicting interpretations of pathogenicity, Likely benign(1);Uncertain significance(1) (Last evaluated: Nov 3, 2020)

Review status:1 star out of maximum of 4 stars

criteria provided, conflicting interpretations

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000724516.4

Allele description [Variation Report for NM_000520.6(HEXA):c.1527-6T>C]

NM_000520.6(HEXA):c.1527-6T>C

Gene:
HEXA:hexosaminidase subunit alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q23
Genomic location:
Preferred name:
NM_000520.6(HEXA):c.1527-6T>C
HGVS:
  • NC_000015.10:g.72344146A>G
  • NG_009017.1:g.37034T>C
  • NG_009017.2:g.37034T>C
  • NM_000520.6:c.1527-6T>CMANE SELECT
  • NM_001318825.2:c.1560-6T>C
  • NC_000015.9:g.72636487A>G
  • NM_000520.4:c.1527-6T>C
  • NM_000520.5:c.1527-6T>C
Links:
dbSNP: rs199914308
NCBI 1000 Genomes Browser:
rs199914308
Molecular consequence:
  • NM_000520.6:c.1527-6T>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001318825.2:c.1560-6T>C - intron variant - [Sequence Ontology: SO:0001627]
Observations:
1

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000226036EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Uncertain significance
(Jan 2, 2015)
germlineclinical testing

Citation Link,

SCV001881577GeneDxcriteria provided, single submitter
Likely benign
(Nov 3, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000226036.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV001881577.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 9090523)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 18, 2021

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