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NM_000070.3(CAPN3):c.2051-1G>T AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Sep 6, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000724152.7

Allele description [Variation Report for NM_000070.3(CAPN3):c.2051-1G>T]

NM_000070.3(CAPN3):c.2051-1G>T

Gene:
CAPN3:calpain 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q15.1
Genomic location:
Preferred name:
NM_000070.3(CAPN3):c.2051-1G>T
Other names:
c.2099-1G>T
HGVS:
  • NC_000015.10:g.42409930G>T
  • NG_008660.1:g.66828G>T
  • NM_000070.3:c.2051-1G>TMANE SELECT
  • NM_024344.2:c.2033-1G>T
  • NM_173087.2:c.1775-1G>T
  • NM_173088.2:c.515-1G>T
  • NM_173089.2:c.56-1G>T
  • NM_173090.2:c.56-1G>T
  • LRG_849t1:c.2051-1G>T
  • LRG_849:g.66828G>T
  • NC_000015.9:g.42702128G>T
  • NM_000070.2:c.2051-1G>T
Links:
dbSNP: rs886042108
NCBI 1000 Genomes Browser:
rs886042108
Molecular consequence:
  • NM_000070.3:c.2051-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_024344.2:c.2033-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_173087.2:c.1775-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_173088.2:c.515-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_173089.2:c.56-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_173090.2:c.56-1G>T - splice acceptor variant - [Sequence Ontology: SO:0001574]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000331664Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Pathogenic
(Nov 2, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV003813118Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Sep 6, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

Ancestral founder mutations in calpain-3 in the Indian Agarwal community: historical, clinical, and molecular perspective.

Ankala A, Kohn JN, Dastur R, Gaitonde P, Khadilkar SV, Hegde MR.

Muscle Nerve. 2013 Jun;47(6):931-7. doi: 10.1002/mus.23763. Epub 2013 May 11.

PubMed [citation]
PMID:
23666804

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Eurofins Ntd Llc (ga), SCV000331664.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From Revvity Omics, Revvity, SCV003813118.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 17, 2024