NM_001130438.3(SPTAN1):c.4199A>T (p.Gln1400Leu) AND Seizures

Clinical significance:Benign (Last evaluated: Dec 28, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000720584.1

Allele description [Variation Report for NM_001130438.3(SPTAN1):c.4199A>T (p.Gln1400Leu)]

NM_001130438.3(SPTAN1):c.4199A>T (p.Gln1400Leu)

Gene:
SPTAN1:spectrin alpha, non-erythrocytic 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001130438.3(SPTAN1):c.4199A>T (p.Gln1400Leu)
Other names:
p.Q1400L:CAG>CTG
HGVS:
  • NC_000009.12:g.128607904A>T
  • NG_027748.1:g.60347A>T
  • NM_001130438.3:c.4199A>TMANE SELECT
  • NM_001195532.2:c.4139A>T
  • NM_001363759.2:c.4199A>T
  • NM_001363765.2:c.4139A>T
  • NM_003127.4:c.4199A>T
  • NP_001123910.1:p.Gln1400Leu
  • NP_001182461.1:p.Gln1380Leu
  • NP_001350688.1:p.Gln1400Leu
  • NP_001350694.1:p.Gln1380Leu
  • NP_003118.2:p.Gln1400Leu
  • NC_000009.11:g.131370183A>T
  • NM_001130438.2:c.4199A>T
Protein change:
Q1380L
Links:
dbSNP: rs143108250
NCBI 1000 Genomes Browser:
rs143108250
Molecular consequence:
  • NM_001130438.3:c.4199A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195532.2:c.4139A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363759.2:c.4199A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363765.2:c.4139A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003127.4:c.4199A>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Seizures
Identifiers:
MedGen: C0036572; Human Phenotype Ontology: HP:0001250

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000851463Ambry Geneticscriteria provided, single submitter
Benign
(Dec 28, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000851463.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

General population or subpopulation frequency is too high to be a pathogenic mutation based on disease/syndrome prevalence and penetrance

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: May 27, 2021

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