NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser) AND Seizures

Clinical significance:Likely benign (Last evaluated: Jul 27, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000718427.1

Allele description [Variation Report for NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)]

NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)

Gene:
SPTAN1:spectrin alpha, non-erythrocytic 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)
Other names:
p.N1527S:AAT>AGT
HGVS:
  • NC_000009.12:g.128608962A>G
  • NG_027748.1:g.61405A>G
  • NM_001130438.3:c.4580A>GMANE SELECT
  • NM_001195532.2:c.4520A>G
  • NM_001363759.2:c.4580A>G
  • NM_001363765.2:c.4520A>G
  • NM_003127.4:c.4580A>G
  • NP_001123910.1:p.Asn1527Ser
  • NP_001182461.1:p.Asn1507Ser
  • NP_001350688.1:p.Asn1527Ser
  • NP_001350694.1:p.Asn1507Ser
  • NP_003118.2:p.Asn1527Ser
  • NC_000009.11:g.131371241A>G
  • NM_001130438.2:c.4580A>G
Protein change:
N1507S
Links:
dbSNP: rs145038571
NCBI 1000 Genomes Browser:
rs145038571
Molecular consequence:
  • NM_001130438.3:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195532.2:c.4520A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363759.2:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363765.2:c.4520A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003127.4:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Seizures
Identifiers:
MedGen: C0036572; Human Phenotype Ontology: HP:0001250

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000849290Ambry Geneticscriteria provided, single submitter
Likely benign
(Jul 27, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000849290.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

In silico models in agreement (benign);Subpopulation frequency in support of benign classification

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: May 16, 2021

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