NM_001111125.3(IQSEC2):c.1641G>A (p.Ala547=) AND History of neurodevelopmental disorder

Clinical significance:Benign (Last evaluated: Apr 13, 2016)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000715143.1

Allele description [Variation Report for NM_001111125.3(IQSEC2):c.1641G>A (p.Ala547=)]

NM_001111125.3(IQSEC2):c.1641G>A (p.Ala547=)

Gene:
IQSEC2:IQ motif and Sec7 domain ArfGEF 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.22
Genomic location:
Preferred name:
NM_001111125.3(IQSEC2):c.1641G>A (p.Ala547=)
HGVS:
  • NC_000023.11:g.53250935C>T
  • NG_021296.2:g.75416G>A
  • NM_001111125.3:c.1641G>AMANE SELECT
  • NM_015075.2:c.1026G>A
  • NP_001104595.1:p.Ala547=
  • NP_055890.1:p.Ala342=
  • LRG_1194t1:c.1641G>A
  • LRG_1194:g.75416G>A
  • LRG_1194p1:p.Ala547=
  • NC_000023.10:g.53280117C>T
  • NM_001111125.1:c.1641G>A
  • NM_001111125.2:c.1641G>A
Links:
dbSNP: rs61745228
NCBI 1000 Genomes Browser:
rs61745228
Molecular consequence:
  • NM_001111125.3:c.1641G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_015075.2:c.1026G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Name:
History of neurodevelopmental disorder
Identifiers:
MedGen: C2711754

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000845971Ambry Geneticscriteria provided, single submitter
Benign
(Apr 13, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From Ambry Genetics, SCV000845971.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

General population or subpopulation frequency is too high to be a pathogenic mutation based on disease/syndrome prevalence and penetrance

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

Last Updated: Oct 30, 2021

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