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NM_001267550.2(TTN):c.105940G>A (p.Ala35314Thr) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (4 submissions)
Last evaluated:
Jan 25, 2021
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000713957.21

Allele description [Variation Report for NM_001267550.2(TTN):c.105940G>A (p.Ala35314Thr)]

NM_001267550.2(TTN):c.105940G>A (p.Ala35314Thr)

Genes:
LOC129935183:ATAC-STARR-seq lymphoblastoid active region 16808 [Gene]
TTN-AS1:TTN antisense RNA 1 [Gene - HGNC]
TTN:titin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q31.2
Genomic location:
Preferred name:
NM_001267550.2(TTN):c.105940G>A (p.Ala35314Thr)
Other names:
p.A32746T:GCA>ACA
HGVS:
  • NC_000002.12:g.178530675C>T
  • NG_011618.3:g.305128G>A
  • NG_051363.1:g.12849C>T
  • NM_001256850.1:c.101017G>A
  • NM_001267550.2:c.105940G>AMANE SELECT
  • NM_003319.4:c.78745G>A
  • NM_133378.4:c.98236G>A
  • NM_133432.3:c.79120G>A
  • NM_133437.4:c.79321G>A
  • NP_001243779.1:p.Ala33673Thr
  • NP_001254479.2:p.Ala35314Thr
  • NP_003310.4:p.Ala26249Thr
  • NP_596869.4:p.Ala32746Thr
  • NP_597676.3:p.Ala26374Thr
  • NP_597681.4:p.Ala26441Thr
  • LRG_391t1:c.105940G>A
  • LRG_391:g.305128G>A
  • NC_000002.11:g.179395402C>T
  • NM_001267550.1:c.105940G>A
  • NM_133378.4:c.98236G>A
Protein change:
A26249T
Links:
dbSNP: rs377171054
NCBI 1000 Genomes Browser:
rs377171054
Molecular consequence:
  • NM_001256850.1:c.101017G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001267550.2:c.105940G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003319.4:c.78745G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_133378.4:c.98236G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_133432.3:c.79120G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_133437.4:c.79321G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000237955GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Aug 20, 2019)
germlineclinical testing

Citation Link,

SCV000334168Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(May 25, 2017)
germlineclinical testing

Citation Link,

SCV000844608Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(Sep 6, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV003827366Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jan 25, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From GeneDx, SCV000237955.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 31983221)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000334168.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From Athena Diagnostics, SCV000844608.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV003827366.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024