NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser) AND not provided

Clinical significance:Conflicting interpretations of pathogenicity, Likely benign(1);Uncertain significance(1) (Last evaluated: Jul 10, 2018)

Review status:1 star out of maximum of 4 stars

criteria provided, conflicting interpretations

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000713515.4

Allele description [Variation Report for NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)]

NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)

Gene:
SPTAN1:spectrin alpha, non-erythrocytic 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_001130438.3(SPTAN1):c.4580A>G (p.Asn1527Ser)
Other names:
p.N1527S:AAT>AGT
HGVS:
  • NC_000009.12:g.128608962A>G
  • NG_027748.1:g.61405A>G
  • NM_001130438.3:c.4580A>GMANE SELECT
  • NM_001195532.2:c.4520A>G
  • NM_001363759.2:c.4580A>G
  • NM_001363765.2:c.4520A>G
  • NM_003127.4:c.4580A>G
  • NP_001123910.1:p.Asn1527Ser
  • NP_001182461.1:p.Asn1507Ser
  • NP_001350688.1:p.Asn1527Ser
  • NP_001350694.1:p.Asn1507Ser
  • NP_003118.2:p.Asn1527Ser
  • NC_000009.11:g.131371241A>G
  • NM_001130438.2:c.4580A>G
Protein change:
N1507S
Links:
dbSNP: rs145038571
NCBI 1000 Genomes Browser:
rs145038571
Molecular consequence:
  • NM_001130438.3:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195532.2:c.4520A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363759.2:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363765.2:c.4520A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_003127.4:c.4580A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
3

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000229775EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Uncertain significance
(Jul 16, 2014)
germlineclinical testing

Citation Link,

SCV000844136Athena Diagnostics Inccriteria provided, single submitter
Likely benign
(Jul 10, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown3not providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000229775.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided3not providednot providednot provided

From Athena Diagnostics Inc, SCV000844136.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 16, 2021

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