NM_000388.4(CASR):c.2064C>T (p.Phe688=) AND not provided

Clinical significance:Conflicting interpretations of pathogenicity, Benign(1);Uncertain significance(1) (Last evaluated: Dec 30, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, conflicting interpretations

Based on:
2 submissions [Details]
Record status:
current
Accession:
RCV000711032.4

Allele description [Variation Report for NM_000388.4(CASR):c.2064C>T (p.Phe688=)]

NM_000388.4(CASR):c.2064C>T (p.Phe688=)

Gene:
CASR:calcium sensing receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q21.1
Genomic location:
Preferred name:
NM_000388.4(CASR):c.2064C>T (p.Phe688=)
HGVS:
  • NC_000003.12:g.122284018C>T
  • NG_009058.1:g.105336C>T
  • NM_000388.4:c.2064C>TMANE SELECT
  • NM_001178065.2:c.2094C>T
  • NP_000379.3:p.Phe688=
  • NP_001171536.2:p.Phe698=
  • NC_000003.11:g.122002865C>T
  • NM_000388.2:c.2064C>T
  • NM_000388.3:c.2064C>T
Links:
dbSNP: rs150869744
NCBI 1000 Genomes Browser:
rs150869744
Molecular consequence:
  • NM_000388.4:c.2064C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001178065.2:c.2094C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000336912EGL Genetic Diagnostics, Eurofins Clinical Diagnosticscriteria provided, single submitter
Uncertain significance
(Nov 11, 2015)
germlineclinical testing

Citation Link,

SCV000841352Athena Diagnostics Inccriteria provided, single submitter
Benign
(Dec 30, 2017)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Identification of rare and frequent variants of the CASR gene by high-resolution melting.

Nissen PH, Christensen SE, Ladefoged SA, Brixen K, Heickendorff L, Mosekilde L.

Clin Chim Acta. 2012 Mar 22;413(5-6):605-11. doi: 10.1016/j.cca.2011.12.004. Epub 2011 Dec 13.

PubMed [citation]
PMID:
22192860

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From EGL Genetic Diagnostics, Eurofins Clinical Diagnostics, SCV000336912.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Athena Diagnostics Inc, SCV000841352.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 6, 2021

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