U.S. flag

An official website of the United States government

GRCh37/hg19 2p22.3-16.1(chr2:34792916-56676541)x3 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 30, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000682169.1

Allele description [Variation Report for GRCh37/hg19 2p22.3-16.1(chr2:34792916-56676541)x3]

GRCh37/hg19 2p22.3-16.1(chr2:34792916-56676541)x3

Genes:
  • HAAO:3-hydroxyanthranilate 3,4-dioxygenase [Gene - OMIM - HGNC]
  • ABCG5:ATP binding cassette subfamily G member 5 [Gene - OMIM - HGNC]
  • ABCG8:ATP binding cassette subfamily G member 8 [Gene - OMIM - HGNC]
  • ATP6V1E2:ATPase H+ transporting V1 subunit E2 [Gene - OMIM - HGNC]
  • CEBPZ:CCAAT enhancer binding protein zeta [Gene - OMIM - HGNC]
  • CDC42EP3:CDC42 effector protein 3 [Gene - OMIM - HGNC]
  • CRIPT:CXXC repeat containing interactor of PDZ3 domain [Gene - OMIM - HGNC]
  • CHAC2:ChaC glutathione specific gamma-glutamylcyclotransferase 2 [Gene - OMIM - HGNC]
  • DHX57:DExH-box helicase 57 [Gene - HGNC]
  • EFEMP1:EGF containing fibulin extracellular matrix protein 1 [Gene - OMIM - HGNC]
  • EML4:EMAP like 4 [Gene - OMIM - HGNC]
  • EML6:EMAP like 6 [Gene - HGNC]
  • FBXO11:F-box protein 11 [Gene - OMIM - HGNC]
  • GPR75:G protein-coupled receptor 75 [Gene - OMIM - HGNC]
  • GPATCH11:G-patch domain containing 11 [Gene - HGNC]
  • GPR75-ASB3:GPR75-ASB3 readthrough [Gene - HGNC]
  • HEATR5B:HEAT repeat containing 5B [Gene - OMIM - HGNC]
  • MORN2:MORN repeat containing 2 [Gene - HGNC]
  • MSH2-OT1:MSH2 overlapping transcript 1 [Gene - HGNC]
  • NDUFAF7:NADH:ubiquinone oxidoreductase complex assembly factor 7 [Gene - OMIM - HGNC]
  • ARHGEF33:Rho guanine nucleotide exchange factor 33 [Gene - HGNC]
  • SRBD1:S1 RNA binding domain 1 [Gene - HGNC]
  • SIX2:SIX homeobox 2 [Gene - OMIM - HGNC]
  • SIX3:SIX homeobox 3 [Gene - OMIM - HGNC]
  • SOS1:SOS Ras/Rac guanine nucleotide exchange factor 1 [Gene - OMIM - HGNC]
  • SOS1-IT1:SOS1 intronic transcript 1 [Gene - HGNC]
  • STON1-GTF2A1L:STON1-GTF2A1L readthrough [Gene - HGNC]
  • THADA:THADA armadillo repeat containing [Gene - OMIM - HGNC]
  • THUMPD2:THUMP domain containing 2 [Gene - OMIM - HGNC]
  • TSPYL6:TSPY like 6 [Gene - HGNC]
  • ZFP36L2:ZFP36 ring finger protein like 2 [Gene - OMIM - HGNC]
  • ACYP2:acylphosphatase 2 [Gene - OMIM - HGNC]
  • ASB3:ankyrin repeat and SOCS box containing 3 [Gene - OMIM - HGNC]
  • ATL2:atlastin GTPase 2 [Gene - OMIM - HGNC]
  • BCYRN1:brain cytoplasmic RNA 1 [Gene - OMIM - HGNC]
  • CALM2:calmodulin 2 [Gene - OMIM - HGNC]
  • CAMKMT:calmodulin-lysine N-methyltransferase [Gene - OMIM - HGNC]
  • C2orf73:chromosome 2 open reading frame 73 [Gene - HGNC]
  • CFAP36:cilia and flagella associated protein 36 [Gene - HGNC]
  • CLHC1:clathrin heavy chain linker domain containing 1 [Gene - HGNC]
  • CCDC85A:coiled-coil domain containing 85A [Gene - HGNC]
  • CCDC88A:coiled-coil domain containing 88A [Gene - OMIM - HGNC]
  • CDKL4:cyclin dependent kinase like 4 [Gene - HGNC]
  • CRIM1:cysteine rich transmembrane BMP regulator 1 [Gene - OMIM - HGNC]
  • CYP1B1:cytochrome P450 family 1 subfamily B member 1 [Gene - OMIM - HGNC]
  • COX7A2L:cytochrome c oxidase subunit 7A2 like [Gene - OMIM - HGNC]
  • DYNC2LI1:dynein cytoplasmic 2 light intermediate chain 1 [Gene - OMIM - HGNC]
  • ERLEC1:endoplasmic reticulum lectin 1 [Gene - OMIM - HGNC]
  • EPAS1:endothelial PAS domain protein 1 [Gene - OMIM - HGNC]
  • EPCAM:epithelial cell adhesion molecule [Gene - OMIM - HGNC]
  • EIF2AK2:eukaryotic translation initiation factor 2 alpha kinase 2 [Gene - OMIM - HGNC]
  • FEZ2:fasciculation and elongation protein zeta 2 [Gene - OMIM - HGNC]
  • FSHR:follicle stimulating hormone receptor [Gene - OMIM - HGNC]
  • FOXN2:forkhead box N2 [Gene - OMIM - HGNC]
  • GALM:galactose mutarotase [Gene - OMIM - HGNC]
  • GEMIN6:gem nuclear organelle associated protein 6 [Gene - OMIM - HGNC]
  • GTF2A1L:general transcription factor IIA subunit 1 like [Gene - OMIM - HGNC]
  • QPCT:glutaminyl-peptide cyclotransferase [Gene - OMIM - HGNC]
  • HNRNPLL:heterogeneous nuclear ribonucleoprotein L like [Gene - OMIM - HGNC]
  • LRPPRC:leucine rich pentatricopeptide repeat containing [Gene - OMIM - HGNC]
  • LINC02898:long intergenic non-protein coding RNA 2898 [Gene - HGNC]
  • LHCGR:luteinizing hormone/choriogonadotropin receptor [Gene - OMIM - HGNC]
  • MTA3:metastasis associated 1 family member 3 [Gene - OMIM - HGNC]
  • MIR216A:microRNA 216a [Gene - OMIM - HGNC]
  • MIR217:microRNA 217 [Gene - OMIM - HGNC]
  • MTIF2:mitochondrial translational initiation factor 2 [Gene - OMIM - HGNC]
  • MAP4K3:mitogen-activated protein kinase kinase kinase kinase 3 [Gene - OMIM - HGNC]
  • MCFD2:multiple coagulation factor deficiency 2, ER cargo receptor complex subunit [Gene - OMIM - HGNC]
  • MSH2:mutS homolog 2 [Gene - OMIM - HGNC]
  • MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
  • NRXN1:neurexin 1 [Gene - OMIM - HGNC]
  • OXER1:oxoeicosanoid receptor 1 [Gene - OMIM - HGNC]
  • PIGF:phosphatidylinositol glycan anchor biosynthesis class F [Gene - OMIM - HGNC]
  • PLEKHH2:pleckstrin homology, MyTH4 and FERM domain containing H2 [Gene - OMIM - HGNC]
  • PNPT1:polyribonucleotide nucleotidyltransferase 1 [Gene - OMIM - HGNC]
  • KCNK12:potassium two pore domain channel subfamily K member 12 [Gene - OMIM - HGNC]
  • KCNG3:potassium voltage-gated channel modifier subfamily G member 3 [Gene - OMIM - HGNC]
  • PREPL:prolyl endopeptidase like [Gene - OMIM - HGNC]
  • PSME4:proteasome activator subunit 4 [Gene - OMIM - HGNC]
  • PRKCE:protein kinase C epsilon [Gene - OMIM - HGNC]
  • PRKD3:protein kinase D3 [Gene - OMIM - HGNC]
  • PKDCC:protein kinase domain containing, cytoplasmic [Gene - OMIM - HGNC]
  • PPP1R21:protein phosphatase 1 regulatory subunit 21 [Gene - OMIM - HGNC]
  • PPP4R3B:protein phosphatase 4 regulatory subunit 3B [Gene - OMIM - HGNC]
  • PPM1B:protein phosphatase, Mg2+/Mn2+ dependent 1B [Gene - OMIM - HGNC]
  • RHOQ:ras homolog family member Q [Gene - OMIM - HGNC]
  • RMDN2:regulator of microtubule dynamics 2 [Gene - OMIM - HGNC]
  • RTN4:reticulon 4 [Gene - OMIM - HGNC]
  • RPS27A:ribosomal protein S27a [Gene - OMIM - HGNC]
  • SRSF7:serine and arginine rich splicing factor 7 [Gene - OMIM - HGNC]
  • SLC3A1:solute carrier family 3 member 1 [Gene - OMIM - HGNC]
  • SLC8A1:solute carrier family 8 member A1 [Gene - OMIM - HGNC]
  • SPTBN1:spectrin beta, non-erythrocytic 1 [Gene - OMIM - HGNC]
  • STPG4:sperm-tail PG-rich repeat containing 4 [Gene - HGNC]
  • STON1:stonin 1 [Gene - OMIM - HGNC]
  • STRN:striatin [Gene - OMIM - HGNC]
  • SULT6B1:sulfotransferase family 6B member 1 [Gene - OMIM - HGNC]
  • SOCS5:suppressor of cytokine signaling 5 [Gene - OMIM - HGNC]
  • TTC7A:tetratricopeptide repeat domain 7A [Gene - OMIM - HGNC]
  • TMEM178A:transmembrane protein 178A [Gene - HGNC]
  • TMEM247:transmembrane protein 247 [Gene - HGNC]
  • VIT:vitrin [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2p22.3-16.1
Genomic location:
Chr2: 34792916 - 56676541 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2p22.3-16.1(chr2:34792916-56676541)x3
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: CN517202

    Recent activity

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...

    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000809676Quest Diagnostics Nichols Institute San Juan Capistrano
    no assertion criteria provided
    Pathogenic
    (Apr 30, 2018)
    germlineclinical testing

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

    Details of each submission

    From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000809676.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Mar 26, 2023