U.S. flag

An official website of the United States government

NM_020975.6(RET):c.1119G>A (p.Ala373=) AND not provided

Germline classification:
Likely benign (3 submissions)
Last evaluated:
Mar 1, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000679710.21

Allele description [Variation Report for NM_020975.6(RET):c.1119G>A (p.Ala373=)]

NM_020975.6(RET):c.1119G>A (p.Ala373=)

Gene:
RET:ret proto-oncogene [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q11.21
Genomic location:
Preferred name:
NM_020975.6(RET):c.1119G>A (p.Ala373=)
HGVS:
  • NC_000010.11:g.43109086G>A
  • NG_007489.1:g.37018G>A
  • NM_000323.2:c.1119G>A
  • NM_001355216.2:c.357G>A
  • NM_001406743.1:c.1119G>A
  • NM_001406744.1:c.1119G>A
  • NM_001406759.1:c.1119G>A
  • NM_001406760.1:c.1119G>A
  • NM_001406761.1:c.990G>A
  • NM_001406762.1:c.990G>A
  • NM_001406763.1:c.1119G>A
  • NM_001406764.1:c.990G>A
  • NM_001406765.1:c.1119G>A
  • NM_001406766.1:c.831G>A
  • NM_001406767.1:c.831G>A
  • NM_001406768.1:c.990G>A
  • NM_001406769.1:c.868-2121G>A
  • NM_001406770.1:c.831G>A
  • NM_001406771.1:c.681G>A
  • NM_001406772.1:c.868-2121G>A
  • NM_001406773.1:c.681G>A
  • NM_001406774.1:c.739-2121G>A
  • NM_001406775.1:c.393G>A
  • NM_001406776.1:c.393G>A
  • NM_001406777.1:c.393G>A
  • NM_001406778.1:c.393G>A
  • NM_001406779.1:c.626-3013G>A
  • NM_001406780.1:c.626-3013G>A
  • NM_001406781.1:c.626-3013G>A
  • NM_001406782.1:c.626-3013G>A
  • NM_001406783.1:c.497-3013G>A
  • NM_001406784.1:c.129G>A
  • NM_001406785.1:c.626-3013G>A
  • NM_001406786.1:c.497-3013G>A
  • NM_001406787.1:c.626-3013G>A
  • NM_001406788.1:c.338-3013G>A
  • NM_001406789.1:c.338-3013G>A
  • NM_001406790.1:c.338-3013G>A
  • NM_001406791.1:c.338-3013G>A
  • NM_001406792.1:c.74-3013G>A
  • NM_001406793.1:c.74-3013G>A
  • NM_001406794.1:c.74-3013G>A
  • NM_020629.2:c.1119G>A
  • NM_020630.7:c.1119G>A
  • NM_020975.6:c.1119G>AMANE SELECT
  • NP_000314.1:p.Ala373=
  • NP_001342145.1:p.Ala119=
  • NP_001393672.1:p.Ala373=
  • NP_001393673.1:p.Ala373=
  • NP_001393688.1:p.Ala373=
  • NP_001393689.1:p.Ala373=
  • NP_001393690.1:p.Ala330=
  • NP_001393691.1:p.Ala330=
  • NP_001393692.1:p.Ala373=
  • NP_001393693.1:p.Ala330=
  • NP_001393694.1:p.Ala373=
  • NP_001393695.1:p.Ala277=
  • NP_001393696.1:p.Ala277=
  • NP_001393697.1:p.Ala330=
  • NP_001393699.1:p.Ala277=
  • NP_001393700.1:p.Ala227=
  • NP_001393702.1:p.Ala227=
  • NP_001393704.1:p.Ala131=
  • NP_001393705.1:p.Ala131=
  • NP_001393706.1:p.Ala131=
  • NP_001393707.1:p.Ala131=
  • NP_001393713.1:p.Ala43=
  • NP_065680.1:p.Ala373=
  • NP_065681.1:p.Ala373=
  • NP_065681.1:p.Ala373=
  • NP_066124.1:p.Ala373=
  • NP_066124.1:p.Ala373=
  • LRG_518t1:c.1119G>A
  • LRG_518t2:c.1119G>A
  • LRG_518:g.37018G>A
  • LRG_518p1:p.Ala373=
  • LRG_518p2:p.Ala373=
  • NC_000010.10:g.43604534G>A
  • NM_020630.4:c.1119G>A
  • NM_020975.4:c.1119G>A
Links:
dbSNP: rs113931414
NCBI 1000 Genomes Browser:
rs113931414
Molecular consequence:
  • NM_001406769.1:c.868-2121G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406772.1:c.868-2121G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406774.1:c.739-2121G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406779.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406780.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406781.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406782.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406783.1:c.497-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406785.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406786.1:c.497-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406787.1:c.626-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406788.1:c.338-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406789.1:c.338-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406790.1:c.338-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406791.1:c.338-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406792.1:c.74-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406793.1:c.74-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406794.1:c.74-3013G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000323.2:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001355216.2:c.357G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406743.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406744.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406759.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406760.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406761.1:c.990G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406762.1:c.990G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406763.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406764.1:c.990G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406765.1:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406766.1:c.831G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406767.1:c.831G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406768.1:c.990G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406770.1:c.831G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406771.1:c.681G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406773.1:c.681G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406775.1:c.393G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406776.1:c.393G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406777.1:c.393G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406778.1:c.393G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406784.1:c.129G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_020629.2:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_020630.7:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_020975.6:c.1119G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000806995PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Dec 20, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000968718GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely benign
(May 7, 2018)
germlineclinical testing

Citation Link,

SCV003916596CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Mar 1, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV000806995.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV000968718.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV003916596.13

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

RET: BP4, BP7, BS1

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024