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NM_080680.3(COL11A2):c.889G>A (p.Gly297Ser) AND Otospondylomegaepiphyseal dysplasia, autosomal dominant

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 3, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000678342.3

Allele description [Variation Report for NM_080680.3(COL11A2):c.889G>A (p.Gly297Ser)]

NM_080680.3(COL11A2):c.889G>A (p.Gly297Ser)

Gene:
COL11A2:collagen type XI alpha 2 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_080680.3(COL11A2):c.889G>A (p.Gly297Ser)
HGVS:
  • NC_000006.12:g.33185042C>T
  • NG_011589.1:g.12427G>A
  • NM_080679.3:c.798+1585G>A
  • NM_080680.3:c.889G>AMANE SELECT
  • NM_080681.3:c.811G>A
  • NP_542411.2:p.Gly297Ser
  • NP_542411.2:p.Gly297Ser
  • NP_542412.2:p.Gly271Ser
  • NC_000006.11:g.33152819C>T
  • NM_080680.2:c.889G>A
Protein change:
G271S
Links:
dbSNP: rs139116571
NCBI 1000 Genomes Browser:
rs139116571
Molecular consequence:
  • NM_080679.3:c.798+1585G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_080680.3:c.889G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080681.3:c.811G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Otospondylomegaepiphyseal dysplasia, autosomal dominant (OSMEDA)
Synonyms:
Stickler syndrome, type 3; Pierre Robin syndrome with fetal chondrodysplasia
Identifiers:
MONDO: MONDO:0008490; MedGen: C1848488; Orphanet: 3450; OMIM: 184840

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000804406Geisinger Autism and Developmental Medicine Institute, Geisinger Health System
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Oct 3, 2017)
maternalprovider interpretation, clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalunknown1not providednot provided1not providedclinical testing, provider interpretation

Citations

PubMed

Novel mutations confirm that COL11A2 is responsible for autosomal recessive non-syndromic hearing loss DFNB53.

Chakchouk I, Grati M, Bademci G, Bensaid M, Ma Q, Chakroun A, Foster J 2nd, Yan D, Duman D, Diaz-Horta O, Ghorbel A, Mittal R, Farooq A, Tekin M, Masmoudi S, Liu XZ.

Mol Genet Genomics. 2015 Aug;290(4):1327-34. doi: 10.1007/s00438-015-0995-9. Epub 2015 Jan 30.

PubMed [citation]
PMID:
25633957
PMCID:
PMC4707654

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Geisinger Autism and Developmental Medicine Institute, Geisinger Health System, SCV000804406.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedprovider interpretation PubMed (2)
2not provided1not providednot providedclinical testing PubMed (2)

Description

This 9 year old female has severe intellectual disability, growth and feeding problems requiring a G-tube as an infant, a repaired cleft palate, short stature (4 SD below average), microcephaly, scoliosis, deviated septum, widely set nipples, curved 4th and 5th digits bilaterally, recurrent nosebleeds, and possible hearing loss. Dysmorphic facial features include midface depression, prominent forehead, low set and posteriorly rotated ears, and micrognathia. Benign pulmonary artery branch stenosis and a small PFO were noted on echocardiogram, and an abnormal brain MRI done at 8 years of age showed scattered, non-enhancing, non-specific punctate predominately subcortical T2 hyperintensities with mild-moderate cerebral volume loss. Her bone age at 8 years, 1 month was essentially normal (0.3 SD below mean). Tympanograms were done at 7 years of age and were within normal limits bilaterally with OAEs at fail/refer results bilaterally. The p.G297S variant was maternally inherited and is present in gnomAD, occurring 0.01% in the Latino population and 0.02% in European non-Finnish. Computational model predictions are inconsistent. A second VUS was also identified in COLL11A2, inheritance is unknown.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalunknownnot providednot providednot providednot providednot providednot providednot provided
2maternalunknown1not providednot provided1not providednot providednot provided

Last Updated: May 16, 2025