NM_000381.4(MID1):c.1725G>A (p.Trp575Ter) AND X-linked Opitz G/BBB syndrome

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Nov 1, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000659857.1

Allele description [Variation Report for NM_000381.4(MID1):c.1725G>A (p.Trp575Ter)]

NM_000381.4(MID1):c.1725G>A (p.Trp575Ter)

Genes:

LOC126863207:BRD4-independent group 4 enhancer GRCh37_chrX:10416979-10418178 [Gene]
MID1:midline 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xp22.2

Genomic location:

Preferred name:

NM_000381.4(MID1):c.1725G>A (p.Trp575Ter)

HGVS:

NC_000023.11:g.10449647C>T
NG_008197.2:g.389044G>A
NM_000381.4:c.1725G>AMANE SELECT
NM_001098624.2:c.1725G>A
NM_001193277.1:c.1725G>A
NM_001347733.2:c.1725G>A
NM_033289.2:c.1611G>A
NM_033290.4:c.1725G>A
NP_000372.1:p.Trp575Ter
NP_000372.1:p.Trp575Ter
NP_001092094.1:p.Trp575Ter
NP_001180206.1:p.Trp575Ter
NP_001334662.1:p.Trp575Ter
NP_150631.1:p.Trp537Ter
NP_150632.1:p.Trp575Ter
NC_000023.10:g.10417687C>T
NG_008197.1:g.389044G>A
NM_000381.3:c.1725G>A

Protein change:

W537*

Links:

dbSNP: rs1556001968

NCBI 1000 Genomes Browser:

rs1556001968

Molecular consequence:

NM_000381.4:c.1725G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_001098624.2:c.1725G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_001193277.1:c.1725G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_001347733.2:c.1725G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_033289.2:c.1611G>A - nonsense - [Sequence Ontology: SO:0001587]
NM_033290.4:c.1725G>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: X-linked Opitz G/BBB syndrome (GBBB)
Synonyms:: OPITZ BBBG SYNDROME, TYPE I; OPITZ SYNDROME, X-LINKED; OPITZ-G SYNDROME, TYPE I; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010222; MedGen: C2936904; Orphanet: 2745; OMIM: 300000

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000781736	Center for Human Genetics, Inc, Center for Human Genetics, Inc	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Nov 1, 2016)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000781736

Center for Human Genetics, Inc, Center for Human Genetics, Inc

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Nov 1, 2016)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Center for Human Genetics, Inc, Center for Human Genetics, Inc, SCV000781736.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 5, 2023

ClinVar

Relating variation to medicine