NM_001048174.2(MUTYH):c.262C>T (p.Arg88Trp) AND not provided

Clinical significance:Uncertain significance (Last evaluated: Feb 7, 2020)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000656907.2

Allele description [Variation Report for NM_001048174.2(MUTYH):c.262C>T (p.Arg88Trp)]

NM_001048174.2(MUTYH):c.262C>T (p.Arg88Trp)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.262C>T (p.Arg88Trp)
Other names:
p.R116W:CGG>TGG
HGVS:
  • NC_000001.11:g.45333415G>A
  • NG_008189.1:g.12056C>T
  • NM_001048171.2:c.262C>T
  • NM_001048172.2:c.265C>T
  • NM_001048173.2:c.262C>T
  • NM_001048174.2:c.262C>TMANE SELECT
  • NM_001128425.1:c.346C>T
  • NM_001128425.2:c.346C>T
  • NM_001293190.2:c.307C>T
  • NM_001293191.2:c.295C>T
  • NM_001293192.2:c.-15C>T
  • NM_001293195.2:c.262C>T
  • NM_001293196.2:c.-15C>T
  • NM_001350650.2:c.-10C>T
  • NM_001350651.2:c.-10C>T
  • NM_012222.3:c.337C>T
  • NP_001041636.2:p.Arg88Trp
  • NP_001041637.1:p.Arg89Trp
  • NP_001041638.1:p.Arg88Trp
  • NP_001041639.1:p.Arg88Trp
  • NP_001121897.1:p.Arg116Trp
  • NP_001121897.1:p.Arg116Trp
  • NP_001280119.1:p.Arg103Trp
  • NP_001280120.1:p.Arg99Trp
  • NP_001280124.1:p.Arg88Trp
  • NP_036354.1:p.Arg113Trp
  • LRG_220t1:c.346C>T
  • LRG_220:g.12056C>T
  • LRG_220p1:p.Arg116Trp
  • NC_000001.10:g.45799087G>A
  • NC_000001.10:g.45799087G>A
  • NR_146882.2:n.490C>T
  • NR_146883.2:n.413C>T
  • p.R116W
Protein change:
R103W
Links:
dbSNP: rs373766973
NCBI 1000 Genomes Browser:
rs373766973
Molecular consequence:
  • NM_001293192.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001293196.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001350650.2:c.-10C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001350651.2:c.-10C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001048171.2:c.262C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048172.2:c.265C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048173.2:c.262C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048174.2:c.262C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.1:c.346C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.2:c.346C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293190.2:c.307C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293191.2:c.295C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293195.2:c.262C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012222.3:c.337C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_146882.2:n.490C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.413C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000211399GeneDxcriteria provided, single submitter
Uncertain significance
(Feb 7, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000211399.13

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as a pathogenic or benign germline variant to our knowledge; This variant is associated with the following publications: (PMID: 25326804, 27499925)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 25, 2021

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