NM_000268.4(NF2):c.563_564del (p.Ile188fs) AND Neurofibromatosis, type 2

Clinical significance:Pathogenic (Last evaluated: Sep 22, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000632648.1

Allele description [Variation Report for NM_000268.4(NF2):c.563_564del (p.Ile188fs)]

NM_000268.4(NF2):c.563_564del (p.Ile188fs)

Gene:
NF2:NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
22q12.2
Genomic location:
Preferred name:
NM_000268.4(NF2):c.563_564del (p.Ile188fs)
HGVS:
  • NC_000022.11:g.29655640_29655641del
  • NG_009057.1:g.57085_57086del
  • NM_000268.4:c.563_564delMANE SELECT
  • NM_016418.5:c.563_564del
  • NM_181825.3:c.563_564del
  • NM_181828.3:c.437_438del
  • NM_181829.3:c.440_441del
  • NM_181830.3:c.314_315del
  • NM_181831.3:c.314_315del
  • NM_181832.3:c.563_564del
  • NM_181833.3:c.447+13355_447+13356del
  • NP_000259.1:p.Ile188fs
  • NP_057502.2:p.Ile188fs
  • NP_861546.1:p.Ile188fs
  • NP_861966.1:p.Ile146fs
  • NP_861967.1:p.Ile147fs
  • NP_861968.1:p.Ile105fs
  • NP_861969.1:p.Ile105fs
  • NP_861970.1:p.Ile188fs
  • LRG_511t2:c.563_564del
  • LRG_511:g.57085_57086del
  • LRG_511p2:p.Ile188fs
  • NC_000022.10:g.30051629_30051630del
  • NM_000268.3:c.563_564delTT
  • NR_156186.2:n.1045_1046del
Protein change:
I105fs
Links:
dbSNP: rs1555993313
NCBI 1000 Genomes Browser:
rs1555993313
Molecular consequence:
  • NM_000268.4:c.563_564del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_016418.5:c.563_564del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181825.3:c.563_564del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181828.3:c.437_438del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181829.3:c.440_441del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181830.3:c.314_315del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181831.3:c.314_315del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181832.3:c.563_564del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181833.3:c.447+13355_447+13356del - intron variant - [Sequence Ontology: SO:0001627]
  • NR_156186.2:n.1045_1046del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Neurofibromatosis, type 2 (NF2)
Synonyms:
NF 2; Neurofibromatosis central type; Acoustic schwannomas bilateral; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007039; MedGen: C0027832; Orphanet: 637; OMIM: 101000

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000753834Invitaecriteria provided, single submitter
Pathogenic
(Sep 22, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV000753834.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This sequence change creates a premature translational stop signal (p.Ile188Asnfs*14) in the NF2 gene. It is expected to result in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with NF2-related disease. Loss-of-function variants in NF2 are known to be pathogenic (PMID: 9643284, 16983642). For these reasons, this variant has been classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 27, 2021

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