NM_130837.3(OPA1):c.679-4G>T AND multiple conditions

Clinical significance:Uncertain significance (Last evaluated: Jan 1, 2017)

Review status:1 star out of maximum of 4 stars

criteria provided, single submitter

Based on:
1 submission [Details]
Record status:
current
Accession:
RCV000626990.1

Allele description [Variation Report for NM_130837.3(OPA1):c.679-4G>T]

NM_130837.3(OPA1):c.679-4G>T

Genes:
OPA1-AS1:OPA1 antisense RNA 1 [Gene - HGNC]
OPA1:OPA1 mitochondrial dynamin like GTPase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q29
Genomic location:
Preferred name:
NM_130837.3(OPA1):c.679-4G>T
HGVS:
  • NC_000003.12:g.193626088G>T
  • NG_011605.1:g.37945G>T
  • NM_001354663.2:c.145-4G>T
  • NM_001354664.2:c.253-5524G>T
  • NM_015560.3:c.625-5524G>T
  • NM_130831.3:c.517-5524G>T
  • NM_130832.3:c.571-5524G>T
  • NM_130833.3:c.517-4G>T
  • NM_130834.3:c.679-5524G>T
  • NM_130835.3:c.571-4G>T
  • NM_130836.3:c.625-4G>T
  • NM_130837.2:c.679-4G>T
  • NM_130837.3:c.679-4G>TMANE SELECT
  • LRG_337t2:c.679-4G>T
  • LRG_337:g.37945G>T
  • NC_000003.11:g.193343877G>T
Links:
dbSNP: rs757018661
NCBI 1000 Genomes Browser:
rs757018661
Molecular consequence:
  • NM_001354663.2:c.145-4G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354664.2:c.253-5524G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_015560.3:c.625-5524G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130831.3:c.517-5524G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130832.3:c.571-5524G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130833.3:c.517-4G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130834.3:c.679-5524G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130835.3:c.571-4G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130836.3:c.625-4G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130837.2:c.679-4G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_130837.3:c.679-4G>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Osteoporosis
Identifiers:
MONDO: MONDO:0005298; MedGen: C0029456; Human Phenotype Ontology: HP:0000939
Name:
Myotonia
Identifiers:
MedGen: C0700153; Human Phenotype Ontology: HP:0002486
Name:
Mildly elevated creatine kinase
Synonyms:
Mildly elevated creatine phosphokinase
Identifiers:
MedGen: C1850309; Human Phenotype Ontology: HP:0008180
Name:
Limb pain
Identifiers:
MedGen: C0030196; Human Phenotype Ontology: HP:0009763

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000747693Centre for Mendelian Genomics,University Medical Centre Ljubljanacriteria provided, single submitter
Uncertain significance
(Jan 1, 2017)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics,University Medical Centre Ljubljana, SCV000747693.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 20, 2021

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