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NM_013275.6(ANKRD11):c.1903_1907del (p.Lys635fs) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 1, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000626912.4

Allele description [Variation Report for NM_013275.6(ANKRD11):c.1903_1907del (p.Lys635fs)]

NM_013275.6(ANKRD11):c.1903_1907del (p.Lys635fs)

Gene:
ANKRD11:ankyrin repeat domain containing 11 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
16q24.3
Genomic location:
Preferred name:
NM_013275.6(ANKRD11):c.1903_1907del (p.Lys635fs)
HGVS:
  • NC_000016.10:g.89284636GTTTT[1]
  • NC_000016.9:g.89351049_89351053del
  • NG_032003.2:g.210918AAACA[1]
  • NM_001256182.2:c.1903_1907del
  • NM_001256183.2:c.1903_1907del
  • NM_013275.6:c.1903_1907delMANE SELECT
  • NP_001243111.1:p.Lys635fs
  • NP_001243112.1:p.Lys635fs
  • NP_037407.4:p.Lys635fs
  • NC_000016.9:g.89351043_89351047del
  • NC_000016.9:g.89351044GTTTT[1]
  • NC_000016.9:g.89351049_89351053del
  • NM_001256182.1:c.1903_1907delAAACA
  • NM_001256182.2:c.1903_1907delAAACA
  • NM_001256183.2:c.1903_1907del
  • NM_013275.4:c.1903_1907delAAACA
  • NM_013275.5:c.1903_1907delAAACA
  • NM_013275.6:c.1903_1907delAAACAMANE SELECT
  • NP_037407.4:p.Lys635GlnfsTer26
  • p.(Lys635Glnfs*26)
Protein change:
K635fs
Links:
dbSNP: rs886041125
NCBI 1000 Genomes Browser:
rs886041125
Molecular consequence:
  • NM_001256182.2:c.1903_1907del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001256183.2:c.1903_1907del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_013275.6:c.1903_1907del - frameshift variant - [Sequence Ontology: SO:0001589]
Functional consequence:
RNA degradation by nonsense-mediated decay [Variation Ontology: 0347]

Condition(s)

Name:
Global developmental delay (DD)
Identifiers:
MedGen: C0557874; Human Phenotype Ontology: HP:0001263
Name:
Ptosis
Synonyms:
Ptosis (disease)
Identifiers:
MONDO: MONDO:0000728; MedGen: C0005745; Human Phenotype Ontology: HP:0000508
Name:
Clinodactyly of the 5th finger
Identifiers:
MedGen: C1850049; Human Phenotype Ontology: HP:0004209
Name:
Conductive hearing impairment
Synonyms:
Conductive hearing loss disorder
Identifiers:
MONDO: MONDO:0020679; MedGen: C0018777; Human Phenotype Ontology: HP:0000405
Name:
Intellectual disability
Synonyms:
Intellectual functioning disability; intellectual disabilities; Intellectual developmental disorder
Identifiers:
MONDO: MONDO:0001071; MeSH: D008607; MedGen: C3714756; Human Phenotype Ontology: HP:0001249
Name:
Short foot
Identifiers:
MedGen: C1848673; Human Phenotype Ontology: HP:0001773
Name:
Short palm
Identifiers:
MedGen: C1843108; Human Phenotype Ontology: HP:0004279
Name:
Unilateral cryptorchidism
Identifiers:
MedGen: C0431664; Human Phenotype Ontology: HP:0012741

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000747615Centre for Mendelian Genomics, University Medical Centre Ljubljana
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jan 1, 2017) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre for Mendelian Genomics, University Medical Centre Ljubljana, SCV000747615.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024