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NM_001378969.1(KCND3):c.5C>A (p.Ala2Glu) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 19, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000624729.2

Allele description [Variation Report for NM_001378969.1(KCND3):c.5C>A (p.Ala2Glu)]

NM_001378969.1(KCND3):c.5C>A (p.Ala2Glu)

Gene:
KCND3:potassium voltage-gated channel subfamily D member 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p13.2
Genomic location:
Preferred name:
NM_001378969.1(KCND3):c.5C>A (p.Ala2Glu)
HGVS:
  • NC_000001.11:g.111982722G>T
  • NG_032011.2:g.11434C>A
  • NM_001378969.1:c.5C>AMANE SELECT
  • NM_001378970.1:c.5C>A
  • NM_004980.5:c.5C>A
  • NM_172198.3:c.5C>A
  • NP_001365898.1:p.Ala2Glu
  • NP_001365899.1:p.Ala2Glu
  • NP_004971.2:p.Ala2Glu
  • NP_004971.2:p.Ala2Glu
  • NP_751948.1:p.Ala2Glu
  • LRG_445t1:c.5C>A
  • LRG_445:g.11434C>A
  • LRG_445p1:p.Ala2Glu
  • NC_000001.10:g.112525344G>T
  • NM_004980.4:c.5C>A
Protein change:
A2E
Links:
dbSNP: rs201340369
NCBI 1000 Genomes Browser:
rs201340369
Molecular consequence:
  • NM_001378969.1:c.5C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001378970.1:c.5C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004980.5:c.5C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172198.3:c.5C>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000743015Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Uncertain significance
(Oct 19, 2016)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Ashkenazi Jewishgermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Epistatic effects of potassium channel variation on cardiac repolarization and atrial fibrillation risk.

Mann SA, Otway R, Guo G, Soka M, Karlsdotter L, Trivedi G, Ohanian M, Zodgekar P, Smith RA, Wouters MA, Subbiah R, Walker B, Kuchar D, Sanders P, Griffiths L, Vandenberg JI, Fatkin D.

J Am Coll Cardiol. 2012 Mar 13;59(11):1017-25. doi: 10.1016/j.jacc.2011.11.039.

PubMed [citation]
PMID:
22402074

Targeted Next-Generation Sequencing of 51 Genes Involved in Primary Electrical Disease.

Proost D, Saenen J, Vandeweyer G, Rotthier A, Alaerts M, Van Craenenbroeck EM, Van Crombruggen J, Mortier G, Wuyts W, Vrints C, Del Favero J, Loeys B, Van Laer L.

J Mol Diagn. 2017 May;19(3):445-459. doi: 10.1016/j.jmoldx.2017.01.010. Epub 2017 Mar 22.

PubMed [citation]
PMID:
28341588
See all PubMed Citations (3)

Details of each submission

From Ambry Genetics, SCV000743015.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Ashkenazi Jewish1not providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Apr 15, 2024